BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4107.p (244 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 231 3e-62 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 159 1e-40 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 157 4e-40 gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding pro... 144 3e-36 gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding pr... 137 4e-34 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 231 bits (588), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 116/236 (49%), Positives = 160/236 (67%) Query: 3 LIAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 +I + NV K +G +VL V G+V+ + G SGSGKSTL++ +NGLE +G+I+V Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 63 AGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGTSEAEAMATAKAN 122 G +G + L LR ++GM+FQ F LFPHLS+ N+ + + V G SE EA Sbjct: 61 DGISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLKY 120 Query: 123 LEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVMR 182 L++VGL + D +P QLSGGQQQRVAIARAL+M P A+L DE TSALDPE++NEVL VM Sbjct: 121 LDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 183 GLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFI 238 GLA++GMT+++VTHEM FAR+V NR++FM QG + E +E FG ++ + F+ Sbjct: 181 GLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRARDFL 236 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 159 bits (402), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 141/240 (58%), Gaps = 8/240 (3%) Query: 4 IAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISVA 63 I + N+ K+FG+ L ++L+ GE+ A++G SG GK+TLLR I GLE D G + + Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 64 GAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIV-KGTSEAEAMATAKAN 122 G A + R +VG +FQ + LF H++V N+ + T +E++ K Sbjct: 63 GEDASARHVRER----QVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVT 118 Query: 123 --LEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTV 180 LE V L D YP QLSGGQ+QR+A+ARAL++ P+ LL DE ALD ++ E+ Sbjct: 119 KLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRW 178 Query: 181 MRGLAKE-GMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 +R L E +T + VTH+ A EV +++V M++G V +IG P++++ NP +P + F+G Sbjct: 179 LRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFLG 238 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 157 bits (397), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 136/240 (56%), Gaps = 6/240 (2%) Query: 1 MPLIAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI 60 M L+ I N+ +RFGDN V+ I+L +E GE ++G SG GK+TLLR I G + D G I Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKI 60 Query: 61 SVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGTSEAEAMATAK 120 + G L E R +R +FQ + LFPH++V N+ P+ + T ++E Sbjct: 61 LLDGVDLTGVPPEQRVVR----TVFQNYALFPHMTVAGNIAF-PLEMANTPKSEIKQKVD 115 Query: 121 ANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTV 180 LE V L YP +LSGGQ+QRV+IARAL P+ LL DE SALD +L ++ Sbjct: 116 EALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIE 175 Query: 181 MRGLAKE-GMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 + L KE G+T + VTH+ A + +R+ M++G + ++ P ++ P++ + FIG Sbjct: 176 LINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIG 235 >gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 266 Score = 144 bits (364), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 84/216 (38%), Positives = 132/216 (61%), Gaps = 9/216 (4%) Query: 8 NVKKRFGDNEV----LKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISVA 63 NV K FG+ + + G++ D+ GE++ I+G SGSGK+TLL I+G+ +EG++ V Sbjct: 45 NVGKWFGEGDARTMAVNGVSFDLYFGEMLFIVGPSGSGKTTLLSIISGILKPNEGSVIVK 104 Query: 64 GAKLGA-SELELRNLRLK-VGMIFQQFNLFPHLSVGRNVMIAPMIVKGTSEAEAMATAKA 121 G L S+ +L + RL +G +FQ ++LFP L+ NV I P+I+K +A+ AK Sbjct: 105 GQDLWQLSKDDLADFRLNTIGFVFQDYHLFPRLTTAENVAI-PLILKKNKWGDAITEAKK 163 Query: 122 NLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVM 181 L+ VGL + D P +LSGG+QQRVAIARA+ P L+ DE T++LD + ++L + Sbjct: 164 YLDIVGLKERVDIVPVKLSGGEQQRVAIARAMVSHPSILILDEPTASLDGDTGRKILAFV 223 Query: 182 RG-LAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKV 216 + E +L+VTH+ R E +R+++M GK+ Sbjct: 224 HDQILNEKTCILIVTHDTRIF-EFADRIMYMEDGKI 258 >gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding protein pxtA [Herminiimonas arsenicoxydans] Length = 262 Score = 137 bits (346), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 131/234 (55%), Gaps = 9/234 (3%) Query: 3 LIAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 +I +++V R+GD L+ +L + G+ ++G SG+GKSTLLRCIN + G I V Sbjct: 1 MIQLNDVSVRYGDTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTIDV 60 Query: 63 AGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGT-------SEAEA 115 G L + L+ R + GM+FQQ L + +NV++ + T S+ E Sbjct: 61 VGLGLLQNRRVLQAHRRQTGMVFQQHQLIARRTALQNVLMGRLGYHTTLRSLFPLSQEEQ 120 Query: 116 MATAKANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVN 175 +A L++VGL HK DQLSGGQQQRV IARAL+ P+ +L DE ++LDP Sbjct: 121 RIGLRA-LDRVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPVASLDPATSE 179 Query: 176 EVLTVMRGLAKE-GMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGN 228 +VL ++R + KE G++ ++ H++ A + +R+V + GKV P +L N Sbjct: 180 KVLEILRQICKEDGISAVVSLHQVDLALKYSDRIVGLAHGKVMFDAVPTDLNEN 233 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 443,227 Number of extensions: 16966 Number of successful extensions: 233 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 161 Number of HSP's successfully gapped: 47 Length of query: 244 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 165 Effective length of database: 740,042 Effective search space: 122106930 Effective search space used: 122106930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)