BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4106.p
         (218 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...    87   6e-19
gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...    77   5e-16

>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score = 87.0 bits (214), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 11/204 (5%)

Query: 19  WTILLSLVTFLLGGTLGLVILFMRTSRQNWIRQIARLYIELFQGTPLLMQLFLVFFGIAL 78
           WT+ ++   ++    LG +I   RT+ + W+  +   Y+ELF+  PLL+Q F+ +F I  
Sbjct: 27  WTLAVAFFAWIFAFVLGSLIGIARTTEKRWLVGLGGAYVELFRNIPLLVQFFVWYFVIPG 86

Query: 79  FGIEVPAWL-----------AAGLALTCWAASYLAEIWRGCVEAIPKGQWEASSVLAMGY 127
               V  W+            A + L  + +S +AE  R  ++++P+GQ  A   L +  
Sbjct: 87  LVPAVKTWVITLDPTIHQFVTAIICLGFFTSSRIAEQVRSGIQSLPRGQRNAGYALGLTG 146

Query: 128 FQQMRYIVLPQAFRIAIAPTVGFGVQIIKSTAVTSIIGFIELSKAGTVITNATFRPFTVF 187
            Q  R+++LP A+RI I P     + +IK+TAV   IG +EL      +   TFR F  F
Sbjct: 147 MQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEMTFRYFEAF 206

Query: 188 AIVGALYFVLCWPLSKYSQSLERK 211
                +Y V+    ++    +ER+
Sbjct: 207 GAATLMYVVIAMLANRVMALVERR 230


>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score = 77.4 bits (189), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 9/208 (4%)

Query: 13  LMLAWRWTILLSLVTFLLGGTLGLVILFMRTSRQNWIRQIARLYIELFQGTPLLMQLFLV 72
           L+   ++T+ L+L   + G   G ++   R S    +  +A  Y+ L +  PLL+ +F  
Sbjct: 16  LLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVNLMRSIPLLLVIFWF 75

Query: 73  FFGIALF-----GIEVPAWLAAG----LALTCWAASYLAEIWRGCVEAIPKGQWEASSVL 123
           +F + +      G E P  L A     +    + A+Y  EI R  +++I KGQ  A+  L
Sbjct: 76  YFLVPVVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSISKGQVNAAYAL 135

Query: 124 AMGYFQQMRYIVLPQAFRIAIAPTVGFGVQIIKSTAVTSIIGFIELSKAGTVITNATFRP 183
            + Y Q MR +VLPQAFR  +   +   + + +  ++ S++   +   A   I     R 
Sbjct: 136 GLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGASVKIAQRDSRV 195

Query: 184 FTVFAIVGALYFVLCWPLSKYSQSLERK 211
             ++  V  +YFVL + LS   + L+++
Sbjct: 196 VEMYLFVAIVYFVLSFALSSMVKQLQKR 223


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.331    0.141    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 356,732
Number of extensions: 12648
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 140
Effective length of database: 743,337
Effective search space: 104067180
Effective search space used: 104067180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)