BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4105.p
         (223 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...    96   1e-21
gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...    87   9e-19

>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score = 95.9 bits (237), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 103/191 (53%), Gaps = 15/191 (7%)

Query: 33  VLGVAVGIFGAWARTQGPGWLKPIVSGYVEIIRNTPFLVQLFFIFFGLP----------- 81
           VLG  +GI    ART    WL  +   YVE+ RN P LVQ F  +F +P           
Sbjct: 41  VLGSLIGI----ARTTEKRWLVGLGGAYVELFRNIPLLVQFFVWYFVIPGLVPAVKTWVI 96

Query: 82  SLDIHISEMQAAILAMVINLGAYSTEIIRAGVQAIPRGQIEAAQSLSMSRSQIFRHIILR 141
           +LD  I +   AI+ +     +   E +R+G+Q++PRGQ  A  +L ++  Q +R ++L 
Sbjct: 97  TLDPTIHQFVTAIICLGFFTSSRIAEQVRSGIQSLPRGQRNAGYALGLTGMQTYRFVLLP 156

Query: 142 PALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYIQGRNFRAFEAYIVATAIYLVL 201
            A + I P L+S+++ ++  +AV   I + EL F    +    FR FEA+  AT +Y+V+
Sbjct: 157 MAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEMTFRYFEAFGAATLMYVVI 216

Query: 202 SILLRQLLRLI 212
           ++L  +++ L+
Sbjct: 217 AMLANRVMALV 227


>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score = 86.7 bits (213), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 105/203 (51%), Gaps = 9/203 (4%)

Query: 17  IVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGYVEIIRNTPFLVQLFFI 76
           ++ G+  T++L     + GV  G   A AR      L  + + YV ++R+ P L+ +F+ 
Sbjct: 16  LLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVNLMRSIPLLLVIFWF 75

Query: 77  FFGLPSL---------DIHISEMQAAILAMVINLGAYSTEIIRAGVQAIPRGQIEAAQSL 127
           +F +P +          + +   ++A +  ++   AY  EI+RAG+Q+I +GQ+ AA +L
Sbjct: 76  YFLVPVVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSISKGQVNAAYAL 135

Query: 128 SMSRSQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYIQGRNFRA 187
            +S +Q  R ++L  A + + P L +Q +++    ++ S + V +   A+  I  R+ R 
Sbjct: 136 GLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGASVKIAQRDSRV 195

Query: 188 FEAYIVATAIYLVLSILLRQLLR 210
            E Y+    +Y VLS  L  +++
Sbjct: 196 VEMYLFVAIVYFVLSFALSSMVK 218


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.141    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 309,797
Number of extensions: 9689
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 2
Length of query: 223
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 145
Effective length of database: 743,337
Effective search space: 107783865
Effective search space used: 107783865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)