BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4104.p
         (260 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093508|ref|YP_001098583.1| glutamate/aspartate periplasmic...    54   7e-09

>gi|134093508|ref|YP_001098583.1| glutamate/aspartate periplasmic
           binding protein ABC transporter [Herminiimonas
           arsenicoxydans]
          Length = 300

 Score = 54.3 bits (129), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 19/275 (6%)

Query: 1   MKLTKLLLGLLAGAMM---FSASVAH--ADALDDIQKHGTLRVAVPADFPPFGSVDSDLK 55
           MK T LL  L+  AMM    +A+ A   +  L  I++ G + +       PF  +D   +
Sbjct: 1   MKSTTLLKTLIGAAMMSTLMTAAQAQELSGTLKKIKETGEITIGYRESSIPFSFLDDKQQ 60

Query: 56  PQGLDID----VAGLIAKKL---GVKVELIPVSSANRIPYLTTRKVDLVISSMGKNAERE 108
           P G  +D    + G +   L    +KV+L PV+S+NRIP L    +DL   S   +  R+
Sbjct: 61  PIGYAMDLCMKIVGTVKADLKLPALKVKLQPVTSSNRIPLLNNGTIDLECGSTTNSIARQ 120

Query: 109 KVIDFTAAYAPFFNGVFGPADLPVKSAADLAGKTIAVTRGSVEDLELSKIVPA-SATVKR 167
           + + F   Y              + + A L GKT++ T G+     L     A +A VK 
Sbjct: 121 EQVAFGPTYFVINVTAAVKKSSNINTIAQLDGKTVSTTSGTTSVPLLKAYKKAGNAQVKE 180

Query: 168 YEDNNSTISSFLSGQVQLVA--TGNVVAAAIIAKNPPKKPETKFL---IKDSPCFIGLNK 222
               +   +  L    +  A    +++ A  IA N  +  + K L   ++  P  + L K
Sbjct: 181 IYGKDHAEAFLLMADDRAAAFVMDDILLAGQIA-NAKRPGDYKILPESLRQEPYSMMLRK 239

Query: 223 GEKKLQDKVDAILAEAKKDGSLNAISQKWLGLPLP 257
           G+ + +  VD  +    + G ++ I  KW   P+P
Sbjct: 240 GDPQFKALVDKSITAVMQSGEIDKIYAKWFTTPIP 274


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 428,194
Number of extensions: 16249
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 180
Effective length of database: 736,747
Effective search space: 132614460
Effective search space used: 132614460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)