BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4103.p
         (249 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094688|ref|YP_001099763.1| GntR family transcriptional reg...    77   7e-16
gi|134095895|ref|YP_001100970.1| GntR family transcriptional reg...    54   5e-09

>gi|134094688|ref|YP_001099763.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 220

 Score = 77.4 bits (189), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 17  ITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTHLMARGIVTVSARRGWYVIEPTP 76
           I E I   +L PG  L E +LA  FGVSRT +REAL  L + GI+ +  RRG  V E  P
Sbjct: 12  IEEMIAVGKLPPGHHLDETELAKEFGVSRTPIREALIQLASMGIIVIRPRRGAIVAEIGP 71

Query: 77  EQAREAFEARRVIELGLLRQA--RVRPIGSEAIRQLREHIAREEAAIAGADVGVRSYLLG 134
           +Q  E FE    +E    R A  R+ P G   ++    H+A EEA    AD     Y   
Sbjct: 72  QQLIEMFEVMAELEAMCARLAARRMSPAGHATLKAT--HLACEEAR-DSADSDAYFYKNE 128

Query: 135 DFHVCLCECLGNSLLSETLRDLTARTTLTAMLH-QSSEQAEDSCSEHVLIVEALERGDLE 193
           +FH  +     NS L E  R L  R      L  +   + + S  EH  +V+A+  G  E
Sbjct: 129 EFHQQIYIGSQNSFLEEQARVLQRRLRPYRRLQLRVRNRVQASFDEHGAVVDAIIEGKGE 188

Query: 194 QAEQLMHTHL 203
            A +L+  H+
Sbjct: 189 LAAELLRQHI 198


>gi|134095895|ref|YP_001100970.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 247

 Score = 54.3 bits (129), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 14/190 (7%)

Query: 21  ILAKQLAPGTRLGEQQLADLFGVSRTQVREALTHLMARGIVTVSARRGWYVIEPTPEQAR 80
           I+   LAPG +L E+++ +  G+SRT +REA+  L + G++ ++  RG +V +    +  
Sbjct: 36  IIEGVLAPGMKLNEREVCERLGISRTPLREAMKVLASEGLIDIAPNRGAFVSKMNDNEIW 95

Query: 81  EAFEARRVIEL--GLLRQARVRPIGSEAIRQLREH--IAREEAAIAGADVGVRSYLLGDF 136
           EAFE    +E   G L   R+ P     I+ L E   + R +  + G     ++      
Sbjct: 96  EAFEMMSGLEALSGELAAERISPAEIADIKVLHEAMLVCRAQNDLPGYYSRNQT-----I 150

Query: 137 HVCLCECLGNSLLSETLRDLTARTTLTAMLHQSSEQ---AEDSCSEHVLIVEALERGDLE 193
           H  + E   NS+L +    +  R  L A+  +S+ Q    + +  EH  +++ALE  D +
Sbjct: 151 HNKINEAARNSMLRQIYLSINRR--LLALRFKSNFQEAKWDRAIHEHDEMIKALESRDGK 208

Query: 194 QAEQLMHTHL 203
           +   ++  HL
Sbjct: 209 RLAAILRQHL 218


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 349,566
Number of extensions: 11032
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 170
Effective length of database: 740,042
Effective search space: 125807140
Effective search space used: 125807140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)