BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4101.p
         (290 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096386|ref|YP_001101461.1| putative transcriptional regula...   105   2e-24

>gi|134096386|ref|YP_001101461.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  105 bits (262), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 16/233 (6%)

Query: 36  LHSHRKGQLVVALHGAVTCETTQGMWIVPPQSAVWIPPGVPHSNRVTPDGQLCFLFI--- 92
           LH HR+ QL+ A  G +   T +G W+VPP  AVW+PPG+ H+  V  D ++  L +   
Sbjct: 16  LHVHREAQLLFASSGIMQVTTPKGRWLVPPARAVWLPPGIEHAVDVLADIEMRALLVPSD 75

Query: 93  --APHATSLP-DHCCTLALTPLLVQMICHLAELPQDYAPHERTARLAAVLVEE--LESSQ 147
             A H  +L  +    + + PLL + I  LA        H   A+   +LVE    E ++
Sbjct: 76  WLATHPDALRLNREFVVTVGPLLRETI--LAAF-----KHAANAKRINLLVEVALFELAE 128

Query: 148 RHVLPLHLPMPQHWRLREIARHLSEHPADRSTVAEWGQRHAMSERSFARFVQAETGMSFG 207
                  +P+P   R R +A  +   PA+   +         S R+  R   AET ++F 
Sbjct: 129 DEDAATFIPLPNDPRARRVADMILADPANDRELELLAHAAGASARTVTRLFSAETNLTFK 188

Query: 208 RWRRQIHLMLALQRLASG-SSVQRVSQDLGYDSVSAFITMFKKTLGKPPARYM 259
            WR++  +M A++ L SG +S+++++  LG+ SV+AF   F++ +G  P   M
Sbjct: 189 EWRQRARIMAAVEALGSGKTSIKQLAAQLGFSSVAAFGHAFRQIMGMTPGEMM 241


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.132    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 531,649
Number of extensions: 20109
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 209
Effective length of database: 733,452
Effective search space: 153291468
Effective search space used: 153291468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)