BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4095.p
         (298 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093612|ref|YP_001098687.1| tartronic semialdehyde reductas...   119   2e-28
gi|134093500|ref|YP_001098575.1| 2-hydroxy-3-oxopropionate reduc...    77   9e-16

>gi|134093612|ref|YP_001098687.1| tartronic semialdehyde reductase
           [Herminiimonas arsenicoxydans]
          Length = 295

 Score =  119 bits (298), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 139/284 (48%), Gaps = 8/284 (2%)

Query: 5   VGVIGLGAMGYGVASSLLRAGFNVHACDVR---KEVLDKFAAAGGVACANPAELAAKVDV 61
           VG IGLG MG  +A +L + G  +   D +   +E++D     G   CA+ AE+A   D+
Sbjct: 4   VGFIGLGIMGAPMALNLQKGGHQLFLHDQKAPAQELVD----GGATVCASGAEVAKNADI 59

Query: 62  VITLVVNAAQTEMVLFGENGAVRAMQPGSVVISSATVAPDFAVELGQRLAEKGLLLLDAP 121
           +IT+V +    + VLF +NG    +  G +V+  ++++P    E  +++   G   LDAP
Sbjct: 60  IITMVPDTPHVDAVLFADNGVAAGLSKGKIVVDMSSISPIATKEFAKKINALGCEYLDAP 119

Query: 122 VSGGAARAASGEMTMMTSGPAEVYAKIEDVLAGMAGKVYRLGDTHGIGSKVKIINQLLAG 181
           VSGG   A +  +T+M  G    +A ++ +   M GK   L   +G G   K+ NQ++  
Sbjct: 120 VSGGEVGAKAASLTIMVGGSEAAFATVKPLFELM-GKNITLVGGNGDGQTTKVANQIIVA 178

Query: 182 VHIAASAEAMALGLREGVNADALYDVITHSAGNSWMFENRVPHILNGDYTPLSAVDIFVK 241
           ++I A +EA+    + G +   +   +     NS + E     ++   + P   +++  K
Sbjct: 179 LNIQAVSEALLFASKAGADPAKVRQALMGGFANSRILEVHGERMIKRTFNPGFRIELHQK 238

Query: 242 DLGLVLDTARRSKFPLPLSAAAHQMFMMASTAGHGGEDDSAVIK 285
           DL L L  A+     LP +AA  ++    +  G  G D SA+ +
Sbjct: 239 DLNLALQGAKAMGVSLPNTAATQELMNACAANGMSGLDHSALCR 282


>gi|134093500|ref|YP_001098575.1| 2-hydroxy-3-oxopropionate
           reductase [Herminiimonas arsenicoxydans]
          Length = 287

 Score = 77.0 bits (188), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 5/248 (2%)

Query: 13  MGYGVASSLLRAGFNVHACDVRKEVLDKFAAAGGVACANPAELAAKVDVVITLVVNAAQT 72
           MG  +A+ LL+AG+ V   +  +   D+ A  G       A      D+VIT++      
Sbjct: 1   MGKPMATRLLQAGYEVTVWNRTRSKADELAPLGAKVAEQAAAAVRAADIVITMLEAGPIV 60

Query: 73  EMVLFGENGAVRAMQPGSVVISSATVAPDFAVELGQRLAEKGLLLLDAPVSGGAARAASG 132
             V+     A+  +Q  ++V+  ++     A E    LA  G+  +DAPVSGG   A +G
Sbjct: 61  AQVI---AAALPGLQRAALVVDMSSTRQSEAQEAHTLLAAHGVRFIDAPVSGGVVGAQAG 117

Query: 133 EMTMMTSGPAEVYAKIEDVLAGMAGKVYRLGDTHGIGSKVKIINQLLAGVHIAASAEAMA 192
            + +M  G A+ +A+ E VLA M G+   +G   G G   K+ NQL+ G  +   AEA+ 
Sbjct: 118 SLAIMAGGSADDFAEAEAVLATM-GRPTLVGPA-GCGQIAKLCNQLIVGGTLNIVAEALL 175

Query: 193 LGLREGVNADALYDVITHSAGNSWMFENRVPHILNGDYTPLSAVDIFVKDLGLVLDTARR 252
           L    G +  A+   I      S + E     +L  ++ P   V    KDL  VL  A  
Sbjct: 176 LAQAGGADPTAVRAAIRGGFAESRILEVHGQRMLERNFMPGGQVKSQFKDLENVLIAAAN 235

Query: 253 SKFPLPLS 260
           +   LP++
Sbjct: 236 AGLRLPVT 243


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 550,620
Number of extensions: 21685
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 217
Effective length of database: 733,452
Effective search space: 159159084
Effective search space used: 159159084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)