BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4092.p (437 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094710|ref|YP_001099785.1| putative transport protein [Her... 480 e-137 gi|134095305|ref|YP_001100380.1| putative permease [Herminiimona... 398 e-112 gi|134093380|ref|YP_001098455.1| putative transporter [Herminiim... 60 2e-10 >gi|134094710|ref|YP_001099785.1| putative transport protein [Herminiimonas arsenicoxydans] Length = 435 Score = 480 bits (1235), Expect = e-137, Method: Compositional matrix adjust. Identities = 237/428 (55%), Positives = 321/428 (75%), Gaps = 2/428 (0%) Query: 12 DVNDKS--KDGLYKKVFWRIMPFLMLCYVIAYLDRVNVGFAKLQMSQDLGFSETVFGLGA 69 ++D++ ++ Y KV R++PFL +CYV AYLDRVNVGFAKL M DL FSETV+GLGA Sbjct: 8 SISDRASLENRTYAKVTLRLLPFLFICYVAAYLDRVNVGFAKLSMLNDLQFSETVYGLGA 67 Query: 70 GLFFIGYFLFEVPSNILMHKVGARIWIARIMITWGILSAAFMFVQNATQFYILRFLLGLA 129 G+FFIGYFLFEVPSNI+MH+VGAR+WIARIMITW +LSAA MFV + T FY++RFLLG+A Sbjct: 68 GIFFIGYFLFEVPSNIIMHRVGARVWIARIMITWSVLSAATMFVTSPTMFYVIRFLLGVA 127 Query: 130 EAGFYPGIILYLTYWFPSHRRAKVIAVFMSGIPVAGILGNPLSGWIMDAFHNNGGLEGWQ 189 EAGF+PGI+LYLTYWFPS RR ++ A+FM GIP+AG++G PLSGWIM+ F G GWQ Sbjct: 128 EAGFFPGIVLYLTYWFPSSRRGRMNALFMIGIPIAGVVGGPLSGWIMNHFAGANGWYGWQ 187 Query: 190 WMFLIEAIPAVLIGVATVLYLDNDVKSAKWLTDEEKASLQADIDGDAKGKESKHGFGAIV 249 W+FL+EAIP++L+GV T+ YL N ++++ WL++ EK L+ +I D H + Sbjct: 188 WLFLLEAIPSLLLGVITLFYLPNTIRASTWLSENEKQVLEENIAQDGSDTSKSHSVAGVF 247 Query: 250 KDARVWLMCLIYFSFVMGQYGLTLWMPTLVKATGVKGNLEIGLLSAIPFGCAIVAMNLIG 309 + +VWLM IYF +MG YG++ ++PTLVKA+GVK L++GLL+AIP+ C ++A L+ Sbjct: 248 TNPKVWLMAAIYFCCMMGLYGISFYLPTLVKASGVKDALDVGLLTAIPYTCGVIATLLVA 307 Query: 310 RSADRLRERRWHLVVPALMGGVGFVGAALFADNTAVSIASLSLAAAGVLTCAPLFWSLPT 369 RSADR+RERRWH + + +GG+G + ++ DN +++ +LSL AG+L+ P+FW+ P+ Sbjct: 308 RSADRMRERRWHFAIASALGGLGLFLSTVYGDNVVLALLALSLGTAGMLSTMPVFWTYPS 367 Query: 370 AFLSGAAAAVGIAAINSVGNLAGFVSPYLIGYLKDLTHNNATGMYMLAVMLVVGSIATLA 429 A L GAAAA GI INSVGNLAGFVSP ++G+LKD+T + GMY +A LV+G+ L Sbjct: 368 AILGGAAAAAGIGLINSVGNLAGFVSPSIVGWLKDVTGSTNAGMYFVAGALVIGAGLALL 427 Query: 430 TKPDVVNK 437 +VNK Sbjct: 428 QPRALVNK 435 >gi|134095305|ref|YP_001100380.1| putative permease [Herminiimonas arsenicoxydans] Length = 450 Score = 398 bits (1022), Expect = e-112, Method: Compositional matrix adjust. Identities = 182/410 (44%), Positives = 277/410 (67%), Gaps = 3/410 (0%) Query: 22 YKKVFWRIMPFLMLCYVIAYLDRVNVGFAKLQMSQDLGFSETVFGLGAGLFFIGYFLFEV 81 Y KV WR++PFL +CY++AYLDR ++ FA++QM DLGFS ++GLGAG+FFIGY LFEV Sbjct: 26 YSKVTWRLIPFLFICYIVAYLDRTSISFAQMQMQNDLGFSAAIYGLGAGIFFIGYSLFEV 85 Query: 82 PSNILMHKVGARIWIARIMITWGILSAAFMFVQNATQFYILRFLLGLAEAGFYPGIILYL 141 PSN+LM ++GAR + RIM+ WGI++ MFV QFY++RFLLG+ EAGF+PG+I +L Sbjct: 86 PSNMLMQRIGARKTLLRIMVLWGIVATGMMFVTTPMQFYVMRFLLGVFEAGFFPGVIYFL 145 Query: 142 TYWFPSHRRAKVIAVFMSGIPVAGILGNPLSGWIMDAFHNNGGLEGWQWMFLIEAIPAVL 201 T W+P RR V+++FM G+P++G+LG P++GW +++ G EGWQW+F IE +PA+L Sbjct: 146 TKWYPGSRRGAVLSMFMLGMPISGVLGGPIAGWALNSLDGVNGWEGWQWLFFIEGLPAIL 205 Query: 202 IGVATVLYLDNDVKSAKWLTDEEKASLQADIDGDAKGKESKHGFGAI--VKDARVWLMCL 259 +G+ L ++ AKWLT+ E+A + ++ D +HG + +KD+RV+++ L Sbjct: 206 LGLMVYWILCDEPSQAKWLTERERALIIRNVKVDQANNPPEHGHSMLSALKDSRVYILSL 265 Query: 260 IYFSFVMGQYGLTLWMPTLVKATGVKGNLEIGLLSAIPFGCAIVAMNLIGRSADRLRERR 319 YF+F+ G Y + W+P ++K GV +IGL S IPFG + + M LI RS+D+ ERR Sbjct: 266 SYFTFISGIYAIGFWLPAMLKNAGVIDVFQIGLYSMIPFGISAIGMVLISRSSDKRLERR 325 Query: 320 WHLVVPALMGGVGFVGAALFADNTAVSIASLSLAAAGVLTCAPLFWSLPTAFLSGAAAAV 379 WHL + A +G +F+ + +S+ +++A + T PLFWS+ +A+ +G AA Sbjct: 326 WHLALCAFIGAASLSAITMFSADLTMSLIVMTVATTAIYTLLPLFWSITSAYFTGTVAAA 385 Query: 380 G-IAAINSVGNLAGFVSPYLIGYLKDLTHNNATGMYMLAVMLVVGSIATL 428 G IA INS+G + G SP +IG++K T + + G++ ++ MLV+G I L Sbjct: 386 GSIALINSLGLIGGMASPSIIGWVKTTTGSMSNGLFAISAMLVLGGIVLL 435 >gi|134093380|ref|YP_001098455.1| putative transporter [Herminiimonas arsenicoxydans] Length = 460 Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 98/437 (22%), Positives = 179/437 (40%), Gaps = 61/437 (13%) Query: 41 YLDRVNVG---FAKLQMSQDLGFSETVFGLGAGLFFIGYFLFEVPSNILMHKVGARIWIA 97 + D +++G F + + G S GL A F+G FL + +L K G + Sbjct: 38 FFDSMDLGIMTFVLGSIKAEFGLSTAQAGLLASSSFLGMFLGAAIAGMLADKYGRKPVFQ 97 Query: 98 RIMITWGILSAAFMFVQNATQFYILRFLLGLAEAGFYPGIILYLTYWFPSHRRAKVIAVF 157 M+ WG+ S A F Q+ Q I R +LG +P + ++ P+ R K +A+ Sbjct: 98 WSMVFWGVGSLACGFAQDVDQLMIFRVILGFGMGMEFPIGLSMVSEIVPAKSRGKYVAIL 157 Query: 158 MSGIPVAGILGNPLSGWIMDAFHNNGGLEGWQWMFLIEAIPAVLIGV------ATVLYLD 211 P+ I L+ + L GW+ +F+ ++PA + V + +L+ Sbjct: 158 EGFWPLGFIAAGILAYLTLP-------LIGWRGIFIALSVPAAFVFVIRRYVPESPRWLE 210 Query: 212 N---DVKSAKWLTDEEKASLQAD----------------IDGDAKG--KESKHGFGAIVK 250 + ++ K ++ EK+ ++A+ + GD + E HG V Sbjct: 211 EVGRNEEAEKVISTMEKSVIRANGGLALPEPAKQAAPSLLKGDKRALFAELWHG----VY 266 Query: 251 DARVWLMCLIYFSFVMGQYGLTLWMPTLVKATGVKGNLEIGLLSAIPFGCAIVAMNLIGR 310 R ++ ++F ++G YGLT W+ L++ G + + ++ + I + G Sbjct: 267 AKRTIMLWALWFFALLGYYGLTTWLGALLQQAGYE------VTKSVTYTIYISLAGIPGF 320 Query: 311 SADRLRERRWHLVVPALMGGVGFVGAALFADNTAVSIASLS-LAAAGVLTCAPLF----W 365 +W ++ VG GAA TA + A + L A+G+ C F W Sbjct: 321 IFSAWLLEKWGRKPTCVLMLVGSAGAAYVYGQTASAQAPVEQLIASGL--CMQFFMFGMW 378 Query: 366 SLPTAF----LSGAAAAVGIAAINSVGNLAGFVSPYLIGYLKDLTHNNATGMYML-AVML 420 S+ A+ + A G +SVG L + P +G + T + TG++ L AV Sbjct: 379 SVLYAYTPELYPTRSRATGAGFASSVGRLGSLLGPLAVGLILPFTGH--TGVFTLGAVSF 436 Query: 421 VVGSIATLATKPDVVNK 437 ++ + +A + K Sbjct: 437 MIAAFVVIALGTETKGK 453 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.326 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 787,829 Number of extensions: 31988 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 4 Length of query: 437 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 353 Effective length of database: 723,567 Effective search space: 255419151 Effective search space used: 255419151 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)