BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4091.p
         (267 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093611|ref|YP_001098686.1| hydroxypyruvate isomerase [Herm...   254   3e-69

>gi|134093611|ref|YP_001098686.1| hydroxypyruvate isomerase
           [Herminiimonas arsenicoxydans]
          Length = 259

 Score =  254 bits (649), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 119/253 (47%), Positives = 166/253 (65%)

Query: 1   MLRFAANLSMMYVEHDFLDRFAAAAKDGFSGVEFLFPYDYQPEEIKSRLEANGLTQALFN 60
           M + AANL+M++ E  F+DRF  AAK+GF GVEFLFPYD+   ++ ++L+ N L   L N
Sbjct: 1   MTKLAANLTMLFNEVPFMDRFEQAAKNGFKGVEFLFPYDFPAADVAAKLKENNLEMVLHN 60

Query: 61  APPGDWAAGERGIASLPGREDEFKRSIDNALKYAAVIGNKTLHVMAGLIQPGQDRARHRA 120
            P G+WA GERGIA  P R +EFK  +D A++Y  V+G K +++++G++  G    +  A
Sbjct: 61  LPAGNWAGGERGIACHPDRVEEFKAGVDKAIEYVKVLGTKQVNILSGIVPAGVTHEQAEA 120

Query: 121 VYLDNLSYAAHQAEAAGLTVVIEPINTRNIPGFFLNRQDDAQAICAEVGAPNLKVQFDCY 180
             + NL YAA + +A G+ ++IE INT +IPGFFL        I A+VG+ NL  Q+D Y
Sbjct: 121 TLVANLKYAAAKLKAEGIPLLIEAINTFDIPGFFLTGTKQTLDIIAKVGSDNLFFQYDIY 180

Query: 181 HCQIVEGDVAVKLKRDMPGIGHIQIAGVPERHEPDVGELNYPYLLKLIDTLGYQGWIGCE 240
           H Q +EG++A  LK ++  I HIQ+A  P R EP  GE+NY +L K +D +GY+GWIGCE
Sbjct: 181 HMQRMEGELANTLKANLAVIPHIQLADNPGRFEPGTGEINYTFLFKFLDEIGYKGWIGCE 240

Query: 241 YNPAGATSAGLGW 253
           Y P   T  GLGW
Sbjct: 241 YKPKAGTVEGLGW 253


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 546,916
Number of extensions: 23145
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 187
Effective length of database: 736,747
Effective search space: 137771689
Effective search space used: 137771689
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)