BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4090.p
         (203 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094529|ref|YP_001099604.1| chemoreceptor glutamine deamida...   303   5e-84

>gi|134094529|ref|YP_001099604.1| chemoreceptor glutamine deamidase
           CheD [Herminiimonas arsenicoxydans]
          Length = 203

 Score =  303 bits (776), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 142/196 (72%), Positives = 172/196 (87%), Gaps = 1/196 (0%)

Query: 9   ENFASYVYHDKAFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVTGVGGMNHFM 68
           E+FA+ VY+D+ FD   AKILPGEY+YTG+DM+IVTVLGSCVSAC+RDRVTGVGGMNHFM
Sbjct: 7   EHFATNVYYDRTFDRDAAKILPGEYYYTGKDMLIVTVLGSCVSACIRDRVTGVGGMNHFM 66

Query: 69  LPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMTAMNVG 128
           LPD G +ADSPVSAS RYGTYAMEVLIND+LKAGA+RENLE KVFGGGAVLRG  AMNVG
Sbjct: 67  LPDSGADADSPVSASARYGTYAMEVLINDLLKAGAKRENLEAKVFGGGAVLRGFIAMNVG 126

Query: 129 ERNAAFVKNYLSAEKIRVVAEDLNDVWPRKVHFFPRTGKVLVKKIKDAGAD-LVSREREY 187
           ERNA FV+++L  E IR++AEDLND+ PRKV++FPR+GKVLVKK+K    + LV+RE++Y
Sbjct: 127 ERNAQFVRDFLKVEGIRIIAEDLNDIHPRKVYYFPRSGKVLVKKLKQLNNNTLVNREQDY 186

Query: 188 ASKLQAKPVGGEIDLF 203
           A++LQ+  V G+I+LF
Sbjct: 187 ANRLQSNNVAGDIELF 202


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 385,944
Number of extensions: 15143
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 126
Effective length of database: 746,632
Effective search space: 94075632
Effective search space used: 94075632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)