BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4088.p
         (285 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093852|ref|YP_001098927.1| hypothetical protein HEAR0600 [...   164   4e-42

>gi|134093852|ref|YP_001098927.1| hypothetical protein HEAR0600
           [Herminiimonas arsenicoxydans]
          Length = 278

 Score =  164 bits (416), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/268 (37%), Positives = 149/268 (55%), Gaps = 7/268 (2%)

Query: 10  LLPSVMLAALLAGCTS-DP-LR--HADAISDRSDLQREEVRGGRFLLTSYVHA-RKRAPL 64
           ++  + ++  L  CTS DP LR  HA  ++  +   R  +  G+F L ++      +  +
Sbjct: 1   MIALIAVSVALVACTSNDPALRRNHASKLALDAGWSRATLEAGKFSLIAFTSPDMAQNNI 60

Query: 65  LRVYIEGDGRAWITRSQHSLDPTPITAMGLRLAANDGGDVV-YLARPCQFTSMTRNPDCQ 123
           L +YIEGDG AWI  S  S DPTP   + LRLA  D    V YLARPCQ+T  +   +C+
Sbjct: 61  LTIYIEGDGFAWIDASTPSFDPTPRNPIALRLAIRDPNKAVAYLARPCQYTYDSERNNCR 120

Query: 124 PAYWTGLRYGSEVVTSMDEALSYYVARLQPDRLELVGYSGGGSIAVLLAARRKDVSAIRT 183
             YWT  R+  EV+ + ++A++         ++ ++GYSGG ++A L+AARR DV  + T
Sbjct: 121 TQYWTTDRFAPEVIEATNQAVNQLKTNSGAKKIRIIGYSGGAAVAALVAARRGDVMMLVT 180

Query: 184 VAGNLDHVAMNRWHEVSQMPRSLNPIDFAAQVAHIPQLHVSGSEDKVIPTAITRTFVAR- 242
           VAGNLDH A  + H V+ +  SLN  D+A  +  IPQ H  G  D  I  +IT+++V+  
Sbjct: 181 VAGNLDHRAWTKMHGVTPLSGSLNSADYAQALHSIPQQHYVGGRDTNIDVSITQSYVSNF 240

Query: 243 AAPCAALKVVPGMKHESDWGALWPDLLQ 270
            AP   + VVP   H   W   WP+L+ 
Sbjct: 241 PAPLPFVTVVPSYTHFCCWEDKWPELVN 268


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 562,773
Number of extensions: 22950
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 204
Effective length of database: 733,452
Effective search space: 149624208
Effective search space used: 149624208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)