BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4085.p (597 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemo... 258 6e-70 gi|134093834|ref|YP_001098909.1| putative methyl-accepting chemo... 248 4e-67 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 240 1e-64 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 233 3e-62 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 232 4e-62 >gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemotaxis sensory transducer [Herminiimonas arsenicoxydans] Length = 633 Score = 258 bits (659), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 163/351 (46%), Positives = 228/351 (64%), Gaps = 9/351 (2%) Query: 250 DWSIV--IAIDE--AEAMAGARSLLNASLLALLLIVGIASMIGVAVTTKAFRRLGQVSQA 305 +W IV +DE EA L A+ +ALLL+ + + + L Q +Q Sbjct: 156 NWVIVGDTYVDEFTHEATVLRNFLAGAACIALLLLT---ACLYAGIRKTVTGPLAQATQL 212 Query: 306 MTAIGSGSGDLTQRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHEASEAVRTASNEIAT 365 + +G DLT RL + DE+ ++ R+ N L NV+ +I +E + T + EIA Sbjct: 213 ARQLATG--DLTSRLETKRTDEIGLLLRAVNSIGQGLANVVWNIRHGTETLATETREIAA 270 Query: 366 ANQDLSSRTESAAASLEQTAASMAEISETVGRSTAAAQEADQRSSTATEIASQGGKVVSD 425 N DLSSRTE A+SLE+TA++M E++ TV + A A++A+ + TA E+A +GG VV++ Sbjct: 271 GNLDLSSRTEQQASSLEETASAMEEMTSTVKENAANAEQANALAHTAAEVAIKGGNVVAE 330 Query: 426 AVSTMGEIEKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSL 485 V TM I + S +I IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+L Sbjct: 331 VVHTMDSINQSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNL 390 Query: 486 AQRSAEAAREVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLISGIARATGEQ 545 AQRS+ AARE+K L+E +VS+V +GS V AG TM E+V+ V +++ I+ A+ EQ Sbjct: 391 AQRSSAAAREIKTLIEDSVSKVQSGSKLVAHAGATMDEVVSSIQRVDNIMGEISSASREQ 450 Query: 546 TRGIQEVNRAVTQLDSMVQQNAALVEQSAAASATLQTQANTLASTIGRFRI 596 + GI++VN+A+ Q+D + QQNAALVEQ+AA++ +LQ Q L + + F I Sbjct: 451 SIGIEQVNQAIAQMDQVTQQNAALVEQAAASAESLQNQTTELNNVVSVFTI 501 >gi|134093834|ref|YP_001098909.1| putative methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 700 Score = 248 bits (634), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 158/340 (46%), Positives = 230/340 (67%), Gaps = 11/340 (3%) Query: 261 EAMAGARSLLNASLLALLLIVGIAS--MIGVAVT-TKAFRRLGQVSQAMTAIGSGSGDLT 317 E+ A RS++ +LA+ L + IA+ ++G V+ + RRLG + + SGDL+ Sbjct: 319 ESDAFHRSMI---MLAICLTMAIAAYFLLGFYVSFSTEVRRLG-----AAVMRTASGDLS 370 Query: 318 QRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHEASEAVRTASNEIATANQDLSSRTESA 377 +++ GKDE+A + +F L ++ + S+ + ASNEIAT N +LS+RTE Sbjct: 371 RKITSGGKDEIAQLLNAFGNMSDGLTRLVTQVRLGSDTIAQASNEIATGNLNLSTRTEEQ 430 Query: 378 AASLEQTAASMAEISETVGRSTAAAQEADQRSSTATEIASQGGKVVSDAVSTMGEIEKVS 437 A+SLEQT+A+M E++ TV ++ A AQ+A++ + TA+ IA QGG VS V TM I++ S Sbjct: 431 ASSLEQTSAAMEELTSTVKQNAAHAQQANRLAKTASGIAEQGGSAVSQVVDTMQAIQQSS 490 Query: 438 GQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAQRSAEAAREVK 497 +I II V+D IAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AA+E+K Sbjct: 491 REISDIIGVVDSIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRNLAQRSAVAAKEIK 550 Query: 498 ELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLISGIARATGEQTRGIQEVNRAVT 557 L+ +V +V AGS QV AGKTM +IV V ++++ I A+ EQ GI+ +N+A+ Sbjct: 551 VLIAASVEKVEAGSKQVNAAGKTMDQIVQSITHVTTIMAEITAASAEQQSGIEHINQALG 610 Query: 558 QLDSMVQQNAALVEQSAAASATLQTQANTLASTIGRFRIS 597 Q+D + QQNAALVE++AAA+ ++ Q L++T+ F+++ Sbjct: 611 QMDGITQQNAALVEEAAAAAESMHEQTLALSATVAVFKLA 650 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 240 bits (613), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 152/324 (46%), Positives = 222/324 (68%), Gaps = 4/324 (1%) Query: 277 LLLIVGIA-SMIGVAVTTKAFRR--LGQVSQAMTAIGS-GSGDLTQRLPDQGKDEVAIIS 332 ++ +VG+ +IGVA+ R G + + + + SGDLT + + ++E+ + Sbjct: 191 IIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIEVKSRNEMGTLM 250 Query: 333 RSFNQFVGQLQNVMLDIHEASEAVRTASNEIATANQDLSSRTESAAASLEQTAASMAEIS 392 + +L + + + E S A+ TA+ EIA N DLSSRTE AASLE+TA+SM E++ Sbjct: 251 LGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELT 310 Query: 393 ETVGRSTAAAQEADQRSSTATEIASQGGKVVSDAVSTMGEIEKVSGQIGAIISVIDGIAF 452 TV ++T A++A+Q +++A+ +A +GG VVSD V+TM I + +I II VIDGIAF Sbjct: 311 STVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAF 370 Query: 453 QTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAQRSAEAAREVKELVETTVSRVSAGSV 512 QTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AA+E+K L++ +V++V AG+ Sbjct: 371 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTR 430 Query: 513 QVRQAGKTMGEIVTQSADVQSLISGIARATGEQTRGIQEVNRAVTQLDSMVQQNAALVEQ 572 V +AG TM E+V V ++S I A+ EQ+ GI++VN A+ Q+D + QQNAALVEQ Sbjct: 431 LVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQ 490 Query: 573 SAAASATLQTQANTLASTIGRFRI 596 +AAA+++L+ QA L++ + F++ Sbjct: 491 AAAAASSLRDQATNLSTVVSVFKL 514 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 233 bits (593), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 132/254 (51%), Positives = 177/254 (69%) Query: 313 SGDLTQRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHEASEAVRTASNEIATANQDLSS 372 +GDLTQ++ +E + ++ L + + +E + AS EIA+ N DLSS Sbjct: 229 AGDLTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSS 288 Query: 373 RTESAAASLEQTAASMAEISETVGRSTAAAQEADQRSSTATEIASQGGKVVSDAVSTMGE 432 RTE+ A SLE+TA+SM E++ TV ++ A++A+Q +ATE+A +GG VVS+ V TMG Sbjct: 289 RTEAQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGS 348 Query: 433 IEKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAQRSAEA 492 I+ S +I II VID IAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA A Sbjct: 349 IKDSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGA 408 Query: 493 AREVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLISGIARATGEQTRGIQEV 552 A+E+K L++ +V +V AGS V QAG TM EIVT V ++S I A+ EQ+ GI++V Sbjct: 409 AKEIKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQV 468 Query: 553 NRAVTQLDSMVQQN 566 N+A++Q+D M QQN Sbjct: 469 NQAISQMDEMTQQN 482 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 232 bits (591), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 137/249 (55%), Positives = 184/249 (73%) Query: 348 DIHEASEAVRTASNEIATANQDLSSRTESAAASLEQTAASMAEISETVGRSTAAAQEADQ 407 DI AS+ + TAS +IA N DLS+RTE A+SLE+TA+SM E++ TV ++ AQ+A+Q Sbjct: 265 DIRRASDTIATASGQIAAGNIDLSARTEQQASSLEETASSMEELTATVKQNAGHAQQANQ 324 Query: 408 RSSTATEIASQGGKVVSDAVSTMGEIEKVSGQIGAIISVIDGIAFQTNILALNAAVEAAR 467 + +A++IA QG VV+ V+TM I +G+IG II VI+GIAFQTNILALNAAVEAAR Sbjct: 325 LAVSASDIAVQGNTVVAQVVTTMDSISASAGRIGDIIGVINGIAFQTNILALNAAVEAAR 384 Query: 468 AGEQGRGFAVVAHEVRSLAQRSAEAAREVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQ 527 GEQGRGFAVVA EVRSLAQRSAEAA+E+K L++ ++ +V AG+ V QAG TM EIV Sbjct: 385 VGEQGRGFAVVATEVRSLAQRSAEAAKEIKSLIDDSLEKVGAGATLVDQAGSTMNEIVAS 444 Query: 528 SADVQSLISGIARATGEQTRGIQEVNRAVTQLDSMVQQNAALVEQSAAASATLQTQANTL 587 V ++ I A+ EQT GI++VN+A+ Q+D + QQNAALVE++AAA+ +LQ QA +L Sbjct: 445 IGQVTDIMGEITTASREQTAGIEQVNQAIGQMDRVTQQNAALVEEAAAAAGSLQEQACSL 504 Query: 588 ASTIGRFRI 596 + F++ Sbjct: 505 VQVVSVFKL 513 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.126 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 862,364 Number of extensions: 32485 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 14 Length of query: 597 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 510 Effective length of database: 713,682 Effective search space: 363977820 Effective search space used: 363977820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)