BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4083.p (258 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095604|ref|YP_001100679.1| putative 3-oxoacyl-[acyl-carrie... 94 5e-21 gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding s... 82 3e-17 gi|134093386|ref|YP_001098461.1| short chain dehydrogenase [Herm... 76 2e-15 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 68 5e-13 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 68 5e-13 >gi|134095604|ref|YP_001100679.1| putative 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 255 Score = 94.4 bits (233), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 123/256 (48%), Gaps = 11/256 (4%) Query: 3 HPRRILITGATGAIGSALAIRYAAPGIHLLLQGRRSELLAGLQWQCLERGAAVETVTLDL 62 H +R+ + GA+ IG+A A + A G + L RR ELLA + LD+ Sbjct: 9 HDKRVWVIGASTGIGAATAQKLLAQGARVALSARRPELLA----MVADGHPNALIAVLDI 64 Query: 63 CDRQELAAWLDQICQA-PLPELVILNAGLNTHIGPRGEPEPWAQVEAVMEVNLRASIFIA 121 D ++A I Q +LV++ AG + R + + ++++N+R + Sbjct: 65 VDHASVSAAHTLIMQQWQGIDLVLIIAGGYHEM--RADSFDLSAAYRLIDLNIRGTYNCL 122 Query: 122 QRLLPGMLARGYGQLALMSSLAACFGLPVTPAYCATKAGLKAYGQALRGWLSPRGIEVNV 181 +LP +LA+G G + +++S+A GLP Y TKA L ++L L PRGI + Sbjct: 123 DLVLPTLLAQGNGGIGIVASVAGYSGLPKALIYGPTKAALINLCESLYIDLHPRGIGAYL 182 Query: 182 ILPGYVNSPMCHDMPGPKPFLWSARRAAQYIQHGLARNRASISFPFPLNWGAWWLQILPT 241 I PG+V +P+ P P + SA AAQ + HGL R + I FP L++LP Sbjct: 183 INPGFVETPLTAGNDFPMPAMISANEAAQELLHGLERGQFHIHFPRRFTNILRILRLLP- 241 Query: 242 ALSLRILGWLGYERHG 257 R+ WL ++ G Sbjct: 242 ---YRLYFWLIHKGTG 254 >gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding subunit [Herminiimonas arsenicoxydans] Length = 248 Score = 82.0 bits (201), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 11/202 (5%) Query: 7 ILITGATGAIGSALAIRYAAPGIHLLLQGRRSELLAGLQWQCLERGAAVETVTLDLCDRQ 66 +LITGA+ G+ +A ++A G ++ GRR + L L E GAAV TV +D+ D+ Sbjct: 3 VLITGASSGFGAEMARKFAQQGHKVIATGRRKDRLDDL---AAELGAAVLTVAMDVTDKH 59 Query: 67 ELAAWLDQI-CQAPLPELVILNAGLNTHIGPRGEPEPWAQVEAVMEVNLRASIFIAQRLL 125 + A LD + + +++I NAGL + P + Q E ++E N + + + + +L Sbjct: 60 SITAALDSLPAEWREIDVLINNAGLALGVAP-AQTASLEQWETMIETNCKGLVTVTRLVL 118 Query: 126 PGMLARGYGQLALMSSLAACFGLPVTPAYCATKAGLKAYGQALRGWLSPRGIEVNVILPG 185 P ML R G + + S A + P Y ATKA + + LR L G+ + PG Sbjct: 119 PDMLKRNRGTIINIGSSAGAYAYPGANVYGATKAFVAQFTLNLRADLVGTGVRATNLAPG 178 Query: 186 ------YVNSPMCHDMPGPKPF 201 + N + D K + Sbjct: 179 LAGGTEFSNVRLSDDAAAAKVY 200 >gi|134093386|ref|YP_001098461.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 75.9 bits (185), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 115/252 (45%), Gaps = 22/252 (8%) Query: 3 HPRRILITGATGAIGSALAIRYAAPGIHLLLQGRRSELLAGLQWQCLERGAAVETVTLDL 62 +R+ ITGA+ +G+ALA +YA G L L RR E+L L L LD+ Sbjct: 7 QAKRVFITGASSGLGAALARQYANEGATLGLVARRGEVLRELA-ASLPNAERHRVYALDV 65 Query: 63 CDRQELAAWLDQICQAPLP-ELVILNAGLNTHIGPRGEPEPWAQ----VEAVMEVNLRAS 117 + LA A ++VI NAG++ RG + + E + N+ A+ Sbjct: 66 SNHAALANAAADFIAAAQGIDIVIANAGIS-----RGTLTEYTEDLHVFEKIFATNVTAT 120 Query: 118 I-----FIAQRLLPGMLARGYGQLALMSSLAACFGLPVTPAYCATKAGLKAYGQALRGWL 172 + FIA + +L + S+A GLP AY A+KA + +Y ++LR L Sbjct: 121 VATFAPFIATMKAQAAAGQTGARLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVEL 180 Query: 173 SPRGIEVNVILPGYVNSPMCHDMPGPKPFLWSARRAAQYIQHGLARNRASISF---PFPL 229 GI+V I PGY+++PM PFL + + + G+A A S+ P+ + Sbjct: 181 QKDGIKVVTIAPGYIDTPMTQVNDYAMPFLMPVEK---FAERGVATIAAGCSYRVIPWQM 237 Query: 230 NWGAWWLQILPT 241 A L++LP Sbjct: 238 GVVAKVLRLLPN 249 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 67.8 bits (164), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 14/199 (7%) Query: 5 RRILITGATGAIGSALAIRYAAPGIHLLLQGRRSELLAGLQWQCLERGAAVETVTLDLCD 64 R L+TG G +G A+ I+ AA G ++ S AG +W + + + CD Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAG-EWLATMKASGYDFRAYP-CD 60 Query: 65 RQELAAWLDQICQAPLP------ELVILNAGLNTHIG-PRGEPEPWAQVEAVMEVNLRAS 117 + + Q C A + ++++ NAG+ + + E W +AVM NL + Sbjct: 61 VSDYDSA--QQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDW---DAVMGTNLDSV 115 Query: 118 IFIAQRLLPGMLARGYGQLALMSSLAACFGLPVTPAYCATKAGLKAYGQALRGWLSPRGI 177 + + + GM+ RG+G++ +SS+ A G Y A KAG+ + +AL ++ + + Sbjct: 116 FNMTKPVCDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAV 175 Query: 178 EVNVILPGYVNSPMCHDMP 196 VN I PGY+ + M +P Sbjct: 176 TVNTISPGYIGTKMVTAIP 194 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 67.8 bits (164), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 10/192 (5%) Query: 8 LITGATGAIGSALAIRYAAPGIHLLLQGRRSELLAGLQWQCLERGAAVETVTLDLCDRQE 67 L+TGA+ IG A+A A G+ ++ A + E G + V LD+ D Sbjct: 12 LVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESG---KGVVLDVNDAAR 68 Query: 68 LAAWLDQICQAPLPELVIL--NAGLN-THIGPRGEPEPWAQVEAVMEVNLRASIFIAQRL 124 A +D+I Q + IL NAG+ + R + E W ++V+ NL + +++ + Sbjct: 69 SVALIDEI-QKEFGTVTILVNNAGITQDQLAMRMKDEEW---DSVIATNLTSVGRLSRAV 124 Query: 125 LPGMLARGYGQLALMSSLAACFGLPVTPAYCATKAGLKAYGQALRGWLSPRGIEVNVILP 184 L GM+ +G++ ++S+ G Y A KAG+ +AL + R I VN + P Sbjct: 125 LRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAP 184 Query: 185 GYVNSPMCHDMP 196 G++++ M + Sbjct: 185 GFIDTDMTKTLS 196 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.139 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 539,103 Number of extensions: 21848 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 9 Length of query: 258 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 178 Effective length of database: 736,747 Effective search space: 131140966 Effective search space used: 131140966 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 128 (53.9 bits)