BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4079.p
         (279 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094554|ref|YP_001099629.1| glucose-1-phosphate uridylyltra...   288   2e-79

>gi|134094554|ref|YP_001099629.1| glucose-1-phosphate
           uridylyltransferase [Herminiimonas arsenicoxydans]
          Length = 291

 Score =  288 bits (738), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 141/275 (51%), Positives = 193/275 (70%), Gaps = 2/275 (0%)

Query: 1   MKPLRKAIFPVAGLGTRLLPATKSIPKEMLTIVDRPLIHYAVSEAIEAGIEVLIFVTSRG 60
           M  +RKA+FPVAGLG+R LPATK+ PKEML IVD+PLI YAV EA+ AGI  +IF+T R 
Sbjct: 1   MNKIRKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIQYAVEEAVAAGITEMIFITGRN 60

Query: 61  KRAIADYFDYHPELEAELQAKGKLEVLASVRNIIPPHVSCVFIHQARPLGLGHAVLCAAE 120
           KRAI D+FD   ELE EL+A GK  +L  V+N+IP HV+C++I Q+ PLGLGHAVLCA  
Sbjct: 61  KRAIEDHFDTAYELERELEAAGKTALLEFVQNVIPKHVNCIYIRQSAPLGLGHAVLCARP 120

Query: 121 MIDDEPFAVLLPDDLIDGTSQGA--LAQLAQLHRQTSASVLAIEEVPRDKVHQYGIIASS 178
           ++ +EPFAVLL DD +D  +  A  LAQ+ ++  +  +S+LA+++VPR +  QYGI++++
Sbjct: 121 VVGNEPFAVLLADDFMDTPAGTAPVLAQMVEIFEREGSSILAVQDVPRAETRQYGIVSAT 180

Query: 179 TSQAGAAVIDAIVEKPSPATAPSNWSVVGRYILPPQVMRALATQAPSVGGEIQLTDAIAS 238
             Q     +DAIVEKP P  APS  +VVGRYIL  ++   L   +   GGEIQLTD IA+
Sbjct: 181 PYQDRLEQVDAIVEKPQPEDAPSTLAVVGRYILSGRIFDYLENVSQGAGGEIQLTDGIAA 240

Query: 239 CLPAEKFLGHPLHGRRFDCGNKEGFIEANLHFSLK 273
            +  +K L +   G+R+DCG+K G+++A +    K
Sbjct: 241 LMRDQKVLAYRYEGQRYDCGSKLGYLKAMVDMGRK 275


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 535,927
Number of extensions: 22173
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 198
Effective length of database: 733,452
Effective search space: 145223496
Effective search space used: 145223496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)