BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4072.p
         (384 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094876|ref|YP_001099951.1| 7-keto-8-aminopelargonic acid s...   168   5e-43

>gi|134094876|ref|YP_001099951.1| 7-keto-8-aminopelargonic acid
           synthetase [Herminiimonas arsenicoxydans]
          Length = 388

 Score =  168 bits (425), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 192/368 (52%), Gaps = 13/368 (3%)

Query: 20  THQGVAGAVTQINGKEYINFSSYNYLGLAGDAQVNRAAKEAIDRYGTSASASRLVAGERP 79
           T Q   G   +++G+  ++F S +YLGLA +  +  AA+EA  R+G  + +S LV+G   
Sbjct: 24  TLQTPCGVRIEVDGRSLLSFCSNDYLGLAAEPTLIDAAREAALRWGVGSGSSHLVSGHFT 83

Query: 80  IQRELEQALAQHYQVQDCLVFVSGHATNVTTIGQLFGPRDLVIHDSLIHKSVLDGIKLSG 139
              ELE  LA     +  L F +G+  N+  +  L G  D V  D L H S++D ++LS 
Sbjct: 84  PHEELEHKLASFVGGERALYFSTGYMANLGVVPALVGRGDAVFADKLNHASLIDAVQLSR 143

Query: 140 AARRSFAHNDMAALERILEEVRNSFELVLIVVEGHYSMDGDIPDLPALIRIKQRHACLLM 199
           A  + + H D+ ALER L   +   +L+L   +  +SMDGD+  L  L+ + +R+   LM
Sbjct: 144 ADHQRYPHGDLTALERQLSASKAKRKLIL--TDAVFSMDGDLAPLTQLLELAERYDAWLM 201

Query: 200 VDEAHSLGVLGTTGKGLHEHFGLPGSEVD--IWMGTLSKTLAGCGGYIAGSTALVEHLKY 257
           VD+AH  G+LG  G+G    +G+  +E    ++MGTL K     G +IAG+  ++E L  
Sbjct: 202 VDDAHGFGILGPQGRGTLVQYGIVLAEHPRLLYMGTLGKAAGVSGAFIAGAEEVIEWLLQ 261

Query: 258 AASGFVYSVGIAPALAAASLTALHLMTTQSERTASLRHNAGLLLETARQAGLDTGSSLGL 317
            A  ++++   +P LAA  L +L L+          R +   LL    Q GL  GS   L
Sbjct: 262 RARTYIFTTASSPMLAATLLKSLDLIAGAD---GDARRSQLQLLIARLQDGLQ-GSRWQL 317

Query: 318 -----SIIPIITGSSTKAVRLSNQLHQRAINVQPIIYPAVEEKTARLRLFVSAQHTRQQI 372
                +I  II G +  A+R++  L ++ + V  I  P V + TARLR+ +SA H+   +
Sbjct: 318 LPSPTAIQAIIIGENDAALRVAAALAEQGLWVPAIRPPTVPKGTARLRITLSAAHSLADV 377

Query: 373 CHTIAVIK 380
              +A ++
Sbjct: 378 DRLLAALQ 385


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 638,766
Number of extensions: 24438
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 301
Effective length of database: 726,862
Effective search space: 218785462
Effective search space used: 218785462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)