BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4068.p
         (271 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093678|ref|YP_001098753.1| putative integrase/recombinase ...    69   2e-13

>gi|134093678|ref|YP_001098753.1| putative integrase/recombinase
           [Herminiimonas arsenicoxydans]
          Length = 333

 Score = 68.9 bits (167), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 107/250 (42%), Gaps = 15/250 (6%)

Query: 7   IFRWLHPHLAHVSLSDIDRDVVRALRDCKARTGVCPATINRMLSLIRAVLNVAQREWGWI 66
           I + L   LA  +LS +        RD + +  V   T+ R L LI  V + A+++W   
Sbjct: 86  IAKLLKHDLAKRTLSTLRNVDFSKYRDERLQE-VSRGTVLRELLLISHVFSTAKKDWSIA 144

Query: 67  EEPPF--IRLLAEPRSRIRFLSRDEAAKLLRELPEH------LSDMAAFSLATGLRKTNV 118
            + P   IR   + +SR R L  DE  +LL    +       L       L TG+R   +
Sbjct: 145 VDNPIASIRKPKQGKSRDRRLQGDEEKRLLAAARDSFCRSPTLDFCIQLGLETGMRAGEI 204

Query: 119 TGLEWSQVDMRRGVAWVHHDQMKNRCALAVPLNQDALAILASRLRRHPRFVFTYKGERIL 178
             L   Q+D++  V  +   + KN     VPL   A  I+ S L      + ++     L
Sbjct: 205 VQLTSDQIDLQNHV--IRLGKTKNGEDRVVPLTTTAEDIIRSMLPSENGRLTSFHDSNGL 262

Query: 179 QTSTAAWYKALKRCRIHNFRWHDLRHTWASWHVQGGTPLHVLQELGGWRTYDMVLRYAHF 238
              + A+ +A  R  I  F +HDLRH  AS       P+  L ++ GW+T  M +RY + 
Sbjct: 263 ---SKAFRRACARAEIKGFCFHDLRHEAASRFAPT-MPVATLAKIMGWKTLQMAMRYYNP 318

Query: 239 SADHLAAYAR 248
             D L A  R
Sbjct: 319 RDDELVAAVR 328


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.136    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 537,993
Number of extensions: 20931
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 191
Effective length of database: 736,747
Effective search space: 140718677
Effective search space used: 140718677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)