BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4058.p
         (255 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093483|ref|YP_001098558.1| putative thioredoxin-like or pr...   330   3e-92

>gi|134093483|ref|YP_001098558.1| putative thioredoxin-like or
           protein-disulfide isomerase [Herminiimonas
           arsenicoxydans]
          Length = 239

 Score =  330 bits (847), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 150/233 (64%), Positives = 191/233 (81%), Gaps = 1/233 (0%)

Query: 23  VSAVVGVSAHAQAEAADSTEATIKKLIEPRLGKDAKVDSVTKTPYAGLYEIQIDGDVIYT 82
           ++ V+G++  A A A  + EA ++K IEPRLG DAKV SVTKTPY+GL+E+Q++GD+IYT
Sbjct: 8   IAVVLGLTFTA-AFAETAQEAAVRKAIEPRLGSDAKVASVTKTPYSGLFEVQVNGDIIYT 66

Query: 83  DAKAQYLFIGRVVDSQTYRDYTKEKIDSLNQVPFSALPLDKAIKTVKGNGKRVIAIFEDP 142
           D KAQYLF+GRVVD++TY+DYTK ++D LNQV FS LPL+ A+K VKGNGKRVIA+FEDP
Sbjct: 67  DVKAQYLFVGRVVDTKTYQDYTKARLDELNQVAFSDLPLEAAMKQVKGNGKRVIAVFEDP 126

Query: 143 NCIYCKRLHKTLQDVDNITYYTFQYNILSPDSIVKSRNIWCAPNPSKAWNEWMVSGKEAP 202
           NC YCK+  KTL+ +++IT YTF YNILSPDSI KSRN+WC+ N +KAW++WM++GK   
Sbjct: 127 NCGYCKQFRKTLEGINDITVYTFMYNILSPDSITKSRNVWCSANRNKAWDDWMLNGKAPA 186

Query: 203 TAPASCNAPHEDVLALGKKLKVTGTPTIFFADGSRIPGAVDAKGLEQKLSSLK 255
           +A  +C  PHE VLALG+ +KVTGTPTI F DGSR+PGA+DAK LE KL SLK
Sbjct: 187 SASDNCVTPHEKVLALGRSMKVTGTPTIIFTDGSRVPGAIDAKALEAKLLSLK 239


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 447,896
Number of extensions: 17969
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 175
Effective length of database: 736,747
Effective search space: 128930725
Effective search space used: 128930725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)