BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4057.p
         (192 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096055|ref|YP_001101130.1| peptidyl-tRNA hydrolase [Hermin...   310   2e-86

>gi|134096055|ref|YP_001101130.1| peptidyl-tRNA hydrolase
           [Herminiimonas arsenicoxydans]
          Length = 196

 Score =  310 bits (795), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 150/193 (77%), Positives = 166/193 (86%), Gaps = 3/193 (1%)

Query: 1   MSIRLIVGLGNPGPEYEQTRHNAGFWLVDNLAGP---VRLTREQRFNALAGKTSIAGNEV 57
           M IRLIVGLGNPG EYEQTRHNAGFWLVD LA       L+RE +++ALA KT+IAG EV
Sbjct: 1   MPIRLIVGLGNPGQEYEQTRHNAGFWLVDELARATPRCTLSRESKYSALAAKTAIAGQEV 60

Query: 58  WLLEPQTYMNRSGQSVGALARFFKINPDEVLVVHDELDLPPGAAKIKKGGSSGGHNGLKD 117
           WLLEPQT+MNRSGQSVGALARF+KI PDE+LV HDELDLPPG AK+KKGGSSGGHNGLKD
Sbjct: 61  WLLEPQTFMNRSGQSVGALARFYKILPDEILVAHDELDLPPGIAKLKKGGSSGGHNGLKD 120

Query: 118 ITAALGTQDYWRLRLGIGHPRTLGLQQPVADFVLHRPRKEEQNLINEALDKSLNVIPLLV 177
           ITAALGTQDYWRLR+GIGHPRTL L Q V DFVLHRPRKEEQ LI+EA+ KSL++IPLL 
Sbjct: 121 ITAALGTQDYWRLRIGIGHPRTLNLNQAVVDFVLHRPRKEEQPLIDEAIAKSLSIIPLLC 180

Query: 178 QGKFEQAMMELHT 190
           +G F  A M+LHT
Sbjct: 181 EGNFNAAAMKLHT 193


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 369,381
Number of extensions: 13978
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 115
Effective length of database: 746,632
Effective search space: 85862680
Effective search space used: 85862680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)