BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4056.p
         (783 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096173|ref|YP_001101248.1| putative polyribonucleotide nuc...  1357   0.0  
gi|134095742|ref|YP_001100817.1| 30S ribosomal protein S1 [Hermi...    57   3e-09

>gi|134096173|ref|YP_001101248.1| putative polyribonucleotide
           nucleotidyltransferase [Herminiimonas arsenicoxydans]
          Length = 780

 Score = 1357 bits (3512), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 684/783 (87%), Positives = 728/783 (92%), Gaps = 3/783 (0%)

Query: 1   MLPSIEQRLALELAAKPVQVAAAIALLDEGATVPFIARYRKEVTGGLDDVQLRLLEERLR 60
           MLPSIEQRLA+ELAAKP QVAAAI LLDEGATVPFI+RYRKE TGGLDD+QLRLLEERLR
Sbjct: 1   MLPSIEQRLAVELAAKPAQVAAAITLLDEGATVPFISRYRKEATGGLDDIQLRLLEERLR 60

Query: 61  YLRELESRRAAIIASIEEQGKMTPVLLDAITHAEDKTRLEDLYLPYKPKRRTKAQIAAEA 120
           YLRELE RRAAI+ASIEEQ KMTP LLDAI HAEDKTRLEDLYLPYK KRRTKAQIA EA
Sbjct: 61  YLRELEDRRAAIVASIEEQNKMTPTLLDAIMHAEDKTRLEDLYLPYKQKRRTKAQIAVEA 120

Query: 121 GLTELADALLNDPSLNPEEEAAKYIKPAFTTDNGDNPGVPDTKAALDGARQILMERFSED 180
           GLT LADALL DP+LNPEEEAAKY+KPAFT +  DNPGV DTKAALDGARQILMERF+ED
Sbjct: 121 GLTPLADALLADPTLNPEEEAAKYLKPAFTVEGIDNPGVADTKAALDGARQILMERFAED 180

Query: 181 AELLQSLREYITEHGVVESKVVEGKQDAGEKFADYFDYSETYSTIPSHRALALFRGRREE 240
           A LLQ+LREY+TEHG+VESKVVEGKQDAGEKFADYFDYSET +TIPSHRALA+FRGRREE
Sbjct: 181 ATLLQALREYLTEHGIVESKVVEGKQDAGEKFADYFDYSETIATIPSHRALAMFRGRREE 240

Query: 241 MLNVVLRLDTEEEKPKWDAPHNPCEGRIASRFGVSNKGRPADKWLSDTVRWAWRVKVFMH 300
           MLNV LRLDTEEEKPKWDAP NPCE RIA+RFG+SN+GR ADKWL+DTVRW WRVK FMH
Sbjct: 241 MLNVNLRLDTEEEKPKWDAPLNPCESRIAARFGISNQGRAADKWLADTVRWTWRVKTFMH 300

Query: 301 LETELMTNLREKAEAEAINVFARNLKDLLLAAPAGPRATMGLDPGLRTGVKVAIVDATGK 360
           LETELMTNLREKAE EAINVFA NLK LLLAAPAGPRATMGLDPGLRTGVKVA+VDATGK
Sbjct: 301 LETELMTNLREKAEVEAINVFALNLKALLLAAPAGPRATMGLDPGLRTGVKVAVVDATGK 360

Query: 361 VVATDTIYPHQPRNDWNGSLHTLSQLAEKHNVSLISIGNGTASRETDKLAQDLIKLRPEL 420
           VV T T+YPHQPRNDW+G+LHTLSQLAEKH V+LISIGNGTASRETDKLAQDLIKLRPEL
Sbjct: 361 VVDTATVYPHQPRNDWDGTLHTLSQLAEKHKVALISIGNGTASRETDKLAQDLIKLRPEL 420

Query: 421 KLTKIVVSEAGASVYSASEFASKELPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVG 480
           KLTKIVVSEAGASVYSASEFAS+ELPD+DVS+RGAVSIARRLQDPLAELVKIDPKSIGVG
Sbjct: 421 KLTKIVVSEAGASVYSASEFASRELPDMDVSIRGAVSIARRLQDPLAELVKIDPKSIGVG 480

Query: 481 QYQHDVSQSQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLNASVAQSIVSYRDMKG 540
           QYQHDV Q+QLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGL++SVAQSIVSYRD KG
Sbjct: 481 QYQHDVGQTQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLSSSVAQSIVSYRDTKG 540

Query: 541 MFNSRAALREVPRLGDKTFEQAAGFLRVMNGENPLDASAVHPESYPLVEKILADIKKDVK 600
           MF SRA LR VPRLGDKTFEQAAGFLRVM G+NPLDASAVHPESYPLVEKILADIKKDVK
Sbjct: 541 MFTSRADLRAVPRLGDKTFEQAAGFLRVMAGDNPLDASAVHPESYPLVEKILADIKKDVK 600

Query: 601 SVLGQTSLLKGLSPSKYADEKFGVPTVTDILKELDKPGRDPRPEFTTATFKDGVEEIKDL 660
           S++G   LLK L+P+KYADEKFGVPT+TDILKEL+KPGRDPRPEFTTATFKDGVEEI+DL
Sbjct: 601 SIIGDDKLLKSLNPAKYADEKFGVPTITDILKELEKPGRDPRPEFTTATFKDGVEEIRDL 660

Query: 661 RVDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNSYVKDPHTVVKAGQVVKVKVLEV 720
           R DMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSN++VKDPHTVVKAGQVVKVKVLEV
Sbjct: 661 RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEV 720

Query: 721 DEKRKRIALTMRLNDTAPAPGARNEQRGDRTDSHRLSQHQNQRGREQAPANNAMAAAFAK 780
           DEKRKRIALTMRL+D AP  G++ EQR DR DS RL+QHQ    R  A + +AMAAAFAK
Sbjct: 721 DEKRKRIALTMRLSDAAPVAGSKPEQRADRNDSKRLAQHQQ---RPAADSGSAMAAAFAK 777

Query: 781 LKG 783
           LKG
Sbjct: 778 LKG 780


>gi|134095742|ref|YP_001100817.1| 30S ribosomal protein S1
           [Herminiimonas arsenicoxydans]
          Length = 559

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 657 IKDLRVDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNSYVKDPHTVVKAGQVVKVK 716
           ++ L+   ++ G+V N+  +GAFVD+G   DGL+HI+ L+   V+ P  V+  GQ +  K
Sbjct: 185 METLKEGTVVTGIVKNITDYGAFVDLG-GIDGLLHITDLAWRRVRHPSEVLTVGQEITAK 243

Query: 717 VLEVDEKRKRIALTMRLNDTAPAPG 741
           VL+ D+++ R++L ++     P  G
Sbjct: 244 VLKYDQEKNRVSLGVKQLGDDPWTG 268


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,321,091
Number of extensions: 51883
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 2
Length of query: 783
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 694
Effective length of database: 707,092
Effective search space: 490721848
Effective search space used: 490721848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 132 (55.5 bits)