BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4053.p
         (596 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096275|ref|YP_001101350.1| bifunctional 3-dehydroquinate s...   840   0.0  

>gi|134096275|ref|YP_001101350.1| bifunctional 3-dehydroquinate
           synthase/shikimate kinase [Herminiimonas arsenicoxydans]
          Length = 554

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/593 (70%), Positives = 480/593 (80%), Gaps = 41/593 (6%)

Query: 1   MTGSIFLVGLMGAGKTTIGRALAKKLNKRFIDSDHEIEARTGATIPVIFEIEGEENFRRR 60
           M G+IFLVGLMGAGKTT+GRALAK+LNK+FIDSDHEIEARTGA IP+IFEIEGE +FR+R
Sbjct: 1   MGGNIFLVGLMGAGKTTVGRALAKRLNKQFIDSDHEIEARTGAAIPLIFEIEGEASFRQR 60

Query: 61  EAEVIRELAALPDIVLATGGGAVLRAENRENLKKGGTVVYLRASVNQILQRTGRDKNRPL 120
           EAEVIR+L A  DIVLATGGGAVL AENR  LK  GTV+YLRASVN +LQRT  DKNRPL
Sbjct: 61  EAEVIRDLTAQQDIVLATGGGAVLNAENRAYLKSRGTVIYLRASVNNLLQRTSHDKNRPL 120

Query: 121 LQIADPRRKLEELSRQRDPLYREVADFVVETNRPNVQFLVQTIISHLELSPKQEDWLVSP 180
           LQ  DPR+ LEELSR R+PLY E+AD V++T RPNVQFL+Q+I++ L             
Sbjct: 121 LQTGDPRKTLEELSRIREPLYNEIADIVIDTGRPNVQFLMQSILAQLG------------ 168

Query: 181 EPDETVVLETSSAVLTQAADGSSTVSHHHSTQIFHGAASAQSEPHRMNQNHASSAAPLTL 240
            P+ T   ++++AV  Q       +S H   Q+                     +A  TL
Sbjct: 169 -PEHT---QSATAVSLQ----QDLLSKHPMPQL---------------------SASHTL 199

Query: 241 QVELGERSYPIHIGHGLLDDAKLLPQYVKGKRVAIVTNDKVGPLYLDKVGNALRAAGKQV 300
            V+LG RSYPI IG  LLDD  ++  ++ G RVAIVTN  V PLYLD++   L AAGK V
Sbjct: 200 YVDLGARSYPISIGQALLDDQTVVAAHIPGARVAIVTNTVVAPLYLDRLTATLEAAGKHV 259

Query: 301 TEIVLPDGEEEKNWASLMKIFDRLLADKCDRKTTLIALGGGVIGDLTGFAAASYMRGVPF 360
           T+IVLPDGEEEKNWA+LMK+FD LLA+KCDRKTTLIALGGGVIGD+TGFAAA+YMRGVPF
Sbjct: 260 TQIVLPDGEEEKNWANLMKVFDVLLAEKCDRKTTLIALGGGVIGDMTGFAAAAYMRGVPF 319

Query: 361 VQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTATLHTLPPRELAAGIAE 420
           +QVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADT+TL+TLP REL+AG++E
Sbjct: 320 IQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTSTLNTLPARELSAGLSE 379

Query: 421 VIKHGAIIDAPFFDWIETNMARLVSKDDAALAYAIQRSCEIKAEVVRQDEREGGLRAILN 480
           VIKHGAIIDAPFFDWIE N+A+LV+KD  ALAYAI+RSCEIKA+VVRQDEREGGLRAILN
Sbjct: 380 VIKHGAIIDAPFFDWIEANIAKLVAKDADALAYAIKRSCEIKADVVRQDEREGGLRAILN 439

Query: 481 FGHTFGHAIENGLGYGQWLHGEAVGCGMVMAADLSQRLGYIDHATRERIRAVTAAAGLPT 540
           FGHTFGHAIE G+GYG WLHGEAVGCGMVMAADLSQRLG+ID  ++ERI AV  AAGLPT
Sbjct: 440 FGHTFGHAIEAGMGYGVWLHGEAVGCGMVMAADLSQRLGFIDARSKERIVAVVKAAGLPT 499

Query: 541 VAPNLGTERWLDLMEVDKKNEGGAIKFILIKPLGSPLITNAPQDLLLQTLAAC 593
           VAP+LG  RWL+LMEVDKKNEGGAIKFIL+KPLG+ +I + PQDLLLQTL AC
Sbjct: 500 VAPDLGVARWLELMEVDKKNEGGAIKFILLKPLGTSIIMSVPQDLLLQTLNAC 552


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,162,848
Number of extensions: 49506
Number of successful extensions: 252
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 2
Length of query: 596
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 509
Effective length of database: 713,682
Effective search space: 363264138
Effective search space used: 363264138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)