BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4052.p
         (688 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096276|ref|YP_001101351.1| fimbrial assembly protein PilQ ...   598   e-172
gi|134095138|ref|YP_001100213.1| mannose-sensitive hemagglutinin...    76   5e-15

>gi|134096276|ref|YP_001101351.1| fimbrial assembly protein PilQ
           [Herminiimonas arsenicoxydans]
          Length = 697

 Score =  598 bits (1543), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 322/701 (45%), Positives = 452/701 (64%), Gaps = 42/701 (5%)

Query: 3   ILLLMLAALLTQSASAENRLHAIDLHHRPDGVTLELRLLHPVDAALVGNFQLIDPPQLVL 62
           I L+M+    T   + EN + +I  + +   V +++ L +P   A +G F + +P ++ L
Sbjct: 11  IYLVMMCGAAT---AQENAIQSITANQQGSNVVVKVALKNPPSKAPIG-FSITNPARIAL 66

Query: 63  DLPRTTAAAHLARSIAGSGLLKRILLASDDERLRLQLQLKQAVIHRLRTEGDSLLVDLE- 121
           D   T  A        G G ++ + +    +R RL   L + + +    +G++++V ++ 
Sbjct: 67  DFAGTANATGKGVQDIGLGDVRNVNVVQAGDRSRLVFNLTRTLNYATVIDGNTVIVTIDG 126

Query: 122 -------------------LRPAADPAELHAIELQRGPLGEARMTVELGSSSHTVQVRQL 162
                                  A    L  I+ +RG  GE R+ V+L ++   V VRQ 
Sbjct: 127 TGGVATAVNAAGLPVANAQTYAGAGSQALRDIDFRRGNNGEGRIVVDLPNNQIAVDVRQQ 186

Query: 163 GRRLIADIAGASLPPALRRQVEVGRFATPLTHYSAYPHEGGVRLVLEAQGQWRYQAYQSG 222
           G++L  D   A+LP  LRR+++V  F TP+   +       VR+ +E +G W + AYQS 
Sbjct: 187 GKKLEVDFMKATLPDVLRRRLDVADFGTPVNLVTTQQQGENVRMTIEPKGAWEHSAYQSD 246

Query: 223 QRLMIDVLPVLAGSTSPGLQDGKTYAGDRLSLNFQNIDVRTALQVLADFSGVNLVASDAV 282
            +L+I+V P+       GL   + Y G++LSLNFQN++VR  LQV+ADF+G+N++ SD V
Sbjct: 247 TQLVIEVKPLKEEPNKLGL-GVRDYRGEKLSLNFQNVEVRAVLQVIADFTGLNIITSDTV 305

Query: 283 TGQLSLRLKDLPWDQALDMILQARGLEMRRSGEVLWIAPREEMLARERQELEQKAMIADL 342
           +G L+LRLKD+PWDQALD+++QA+GL+MR++G V+WIAPR+E+L +E+ ELEQ+A IA+L
Sbjct: 306 SGNLTLRLKDVPWDQALDIVMQAKGLDMRKNGSVIWIAPRDELLTKEKLELEQRAQIAEL 365

Query: 343 EPLHAESFQLNYQRADTLRKALGIGEDGNTQANRRNSLLSRRGSAMIDSHTNQLLVTDTL 402
           EP+  E+FQLNYQ+A++ ++  GI   G        S+LS+RGSA++D  TNQL +TD  
Sbjct: 366 EPVRTETFQLNYQKAESFKQVFGIDNSGGGS----RSILSKRGSAVVDPRTNQLFITDIP 421

Query: 403 AVLANVRKLIERIDVASRQVLIEARIVEADDSFARNLGVKLGLAVTTRGAALGNTYAAVG 462
           + L  +R L+ + DVASRQV+IEARIVEADD F+ +LGVKLG  +  RG    N    VG
Sbjct: 422 SKLEEIRALVLKTDVASRQVMIEARIVEADDKFSSSLGVKLGFGLQ-RGR---NNILEVG 477

Query: 463 EQSGQGSPSSQNPQA-APTGQAPAGPTLRDPALNLRAEALSGATPGSFAFTLFNAAAQRF 521
            Q        QN  A AP        T+   A+NL A  L+G TPGS A TLFNAAA RF
Sbjct: 478 GQ--------QNADASAPGLNLTNLQTVNGNAVNLPASPLNGNTPGSVALTLFNAAATRF 529

Query: 522 LNVELSALEADGRGKIVSSPRLVTADQQTALIEQGEEIPYQQAAGNGTTSTAFKKANLKL 581
           + +ELSALEADG+GKI+SSPR++TADQ  ALIEQG E+PYQQA  +G TS +F+KANL+L
Sbjct: 530 IGLELSALEADGKGKIISSPRVITADQLKALIEQGTELPYQQATSSGATSVSFRKANLRL 589

Query: 582 EVTPQITPDGNVILDVDVNKDSRGSVTPGGLAINTKHIKTKVQVEDGGTVVIGGIYTQTD 641
           EVTPQITPDGNVILDVDVNKDS G  T  G AI+TKH+KT+V +++GGTVVIGGI+ QT+
Sbjct: 590 EVTPQITPDGNVILDVDVNKDSVGVETRSGFAIDTKHVKTQVLIDNGGTVVIGGIFQQTE 649

Query: 642 NDQETRVPLLGEIPVLGALFRSQSKVRDKTELLIFLTPRIV 682
            D  ++VP  G+IPVLG LF++  +  DKTELLIFLTP+I+
Sbjct: 650 RDSVSKVPFFGDIPVLGNLFKTTGRTNDKTELLIFLTPKIL 690


>gi|134095138|ref|YP_001100213.1| mannose-sensitive hemagglutinin L
           [Herminiimonas arsenicoxydans]
          Length = 581

 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 26/183 (14%)

Query: 526 LSALEADGRGKIVSSPRLVTADQQTALIEQG-EEIPYQQAAGNGTTS-----TAFKKANL 579
           +S LE  G   ++SSPR+ T + Q A+++ G +E      + N T+S     T      L
Sbjct: 371 ISFLETQGNVHVLSSPRIATLNNQKAVLKVGTDEFFVTNVSSNITSSGTGGNTVTPNVTL 430

Query: 580 K-------LEVTPQITPDGNVIL-------DVDVNKDSRGSVTPGGLAI------NTKHI 619
           +       L+VTPQI   GN+IL       DV  ++      T GG+        NT   
Sbjct: 431 QPFFSGVVLDVTPQIDEQGNIILHIHPSVSDVQTSEKVINLGTGGGVLTLPLAKSNTSET 490

Query: 620 KTKVQVEDGGTVVIGGIYTQTDNDQETRVPLLGEIPVLGALFRSQSKVRDKTELLIFLTP 679
            + V+ +DG  + +GG+  Q  +   +++P  G++PVLG LFR+ ++   K EL+I L P
Sbjct: 491 DSVVRAQDGNIIALGGLMRQGTSSDRSQLPGAGDVPVLGNLFRNTNQSTQKRELVILLKP 550

Query: 680 RIV 682
            I+
Sbjct: 551 TII 553


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,203,474
Number of extensions: 49278
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 2
Length of query: 688
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 600
Effective length of database: 710,387
Effective search space: 426232200
Effective search space used: 426232200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)