BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4048.p
         (299 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096280|ref|YP_001101355.1| putative membrane protein ComM ...    59   4e-10

>gi|134096280|ref|YP_001101355.1| putative membrane protein ComM
           [Herminiimonas arsenicoxydans]
          Length = 359

 Score = 58.5 bits (140), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 18  GLDITPDRVRLALLRRCGRRAQLLRL----TQRLTGGVICTDGQISDFDALLLMCRSLLD 73
           GLDI+   V+L  L   G+    LRL    ++ L  G +  DG I + D +      +  
Sbjct: 18  GLDISSSGVKLVELSEVGKGE--LRLECFASEPLARGAVV-DGNIENIDQVSDAVHRVWK 74

Query: 74  DPLCHGAALALALPASSLIGRRLVLPAGATPVQRLVQVRAEMAAH-GVGTDDHALDYLEL 132
                    A+ +P +S+I ++++LP+G +     +QV  E + +     D+  LD+  +
Sbjct: 75  KSGTRAKFAAMGMPPASVITKKIILPSGLSEESLELQVETEASQYIPFALDEVRLDFDVI 134

Query: 133 GPQAASPADTQVLALAAPTLAVEDRLALAAA 163
           GP   SP D +V+  A     VEDR+A+A A
Sbjct: 135 GPVENSPEDVEVMLAATRKEKVEDRVAVAEA 165


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 477,162
Number of extensions: 14826
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 218
Effective length of database: 733,452
Effective search space: 159892536
Effective search space used: 159892536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)