BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4047.p (771 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096281|ref|YP_001101356.1| murein polymerase, bifunctional... 1058 0.0 gi|134094841|ref|YP_001099916.1| murein polymerase, bifunctional... 839 0.0 gi|134095915|ref|YP_001100990.1| monofunctional biosynthetic pep... 83 4e-17 >gi|134096281|ref|YP_001101356.1| murein polymerase, bifunctional murein transglycosylase and transpeptidase; penicillin-binding protein PBP1A; dimeric [Herminiimonas arsenicoxydans] Length = 683 Score = 1058 bits (2737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/693 (72%), Positives = 596/693 (86%), Gaps = 13/693 (1%) Query: 82 MKKAVLAIEDDRFYEHGGVDYQGILRATFSNLSGGG-GGASTITQQVARNFFLTSNEPTF 140 MKKAVLAIEDDRF+EHGGVDY GI+RA NLSGG GASTITQQVARNFFL+S Sbjct: 1 MKKAVLAIEDDRFFEHGGVDYVGIVRAAVHNLSGGARQGASTITQQVARNFFLSS----- 55 Query: 141 LQKATRKFFYEIPLAWKIENNLTKDQILEVYMNQIYLGQRAYGFASAAQIYFGKQLKDIT 200 ++ ++ YE+ LAWKIE NL+KDQILEVYMNQIYLGQRAYGF+SAAQIY+GK+L++IT Sbjct: 56 -EQTLKRKIYEVLLAWKIEKNLSKDQILEVYMNQIYLGQRAYGFSSAAQIYYGKKLQNIT 114 Query: 201 IAEAAMLAGLPKAPSAYNPVVNPKRAHARQQYILLRMRQLGYITEAQYQEAKDEELRVKG 260 IAEAAMLAGLPKAPSAYNPVVNPKRA ARQQYIL RMRQLGYI+EA++ +AKDEEL++K Sbjct: 115 IAEAAMLAGLPKAPSAYNPVVNPKRARARQQYILQRMRQLGYISEAEFNQAKDEELKIKT 174 Query: 261 DSSAFGMHAEYVAEMARQLIYAQYKDETYTRGLNVFTTITKADQDAAYIALRRGIIDYER 320 +SS FG+HAEYVAEM RQL+Y Q+K+ETYTRGLNVFTTITKADQDAAY+A+R+G++DYE+ Sbjct: 175 NSSEFGVHAEYVAEMTRQLVYDQFKEETYTRGLNVFTTITKADQDAAYLAVRKGVMDYEK 234 Query: 321 RHGYRGPEGYMDLPENASKEVVEDAVEVELADHPDSDDMVAAVVLEAKPKEITAMLATGE 380 RHGYRGPE Y+++P+N KE EDA+EVELA HPDSDD+VAAVVL+A P+ +TA+L +GE Sbjct: 235 RHGYRGPENYIEIPDN--KEEAEDAIEVELASHPDSDDLVAAVVLDATPQLVTAVLVSGE 292 Query: 381 EISISGAGLGFGANLLSDKAPPQKKIRRGAIIRVFQDGSNWIITQMPEVESAFVSVNSHD 440 EI I GAGL F ANLLS KAPP K+I+RGA+IRV Q+G NW + QMPEV+SAFV+ N+ D Sbjct: 293 EIKIEGAGLTFAANLLSAKAPPNKRIKRGAVIRVMQEGKNWSVIQMPEVQSAFVAANTDD 352 Query: 441 GAIRSLVGGFDFNRNKFNHVTQAWRQPGSSFKPFIYSSSLEKGLSPATIINDAPLTFT-- 498 GAIR+LVGGFDFNRNKFNHVTQAWRQPGSSFKPFIYS+SLEKGLSP+TIINDAP++F Sbjct: 353 GAIRALVGGFDFNRNKFNHVTQAWRQPGSSFKPFIYSASLEKGLSPSTIINDAPISFDAG 412 Query: 499 QTGGQVWQPKNYGGKFEGPISMRRALQKSINLVSIRILERVGVKYAQEYITRFGFDADKN 558 QTGGQ W+PKNY GK++GP++MRR L KS N++SIRIL ++G KY QEYITRFGFDADKN Sbjct: 413 QTGGQPWEPKNYDGKYDGPMTMRRGLTKSKNMISIRILHKIGAKYGQEYITRFGFDADKN 472 Query: 559 PPYLTLALGAGNVTPLQMVGAYSVFANGGYKINPYLITKVTDNNGEVLSQAKPATADDES 618 PPYLTLALGAG VTPLQM ++VFANGGYKINPYLITK+TD +G+ LS+ P A DE+ Sbjct: 473 PPYLTLALGAGAVTPLQMAAGFAVFANGGYKINPYLITKITDASGKPLSEVNPVKAGDEA 532 Query: 619 NRVIDARNAFIMDSMLRDVVRHGTAVKALSLKRTDLAGKTGTTNDSMDAWFAGYQPGLTA 678 NRVIDARNAF+MDSML+DVV GTAVKA++LKRTDLAGKTGTTNDS DAWFAGY P + Sbjct: 533 NRVIDARNAFLMDSMLKDVVTSGTAVKAMALKRTDLAGKTGTTNDSFDAWFAGYHPEIVG 592 Query: 679 IAWIGYDQPKSLGDRETGGGLALPVWISYMSKALKDVPNVDRKVPDGVIESGGEYYYAEF 738 IAWIG+DQPK+LG+RETGGGLALP+WI+YM KALK+VP V+R VP+G+I + G+Y+YAE Sbjct: 593 IAWIGFDQPKNLGNRETGGGLALPIWINYMQKALKNVPTVERTVPEGIITANGDYFYAEN 652 Query: 739 PPSAMVRDLGMGDHGGMTPEEEKAKTQMKNELF 771 PP VR+LG+ D E + ++KNELF Sbjct: 653 PPGLGVRNLGLSD--APVRVNEPTRDEVKNELF 683 >gi|134094841|ref|YP_001099916.1| murein polymerase, bifunctional murein transglycosylase and transpeptidase; penicillin-binding protein PBP1A; dimeric (Mca like) [Herminiimonas arsenicoxydans] Length = 837 Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/742 (56%), Positives = 538/742 (72%), Gaps = 14/742 (1%) Query: 20 VMALLGVAFIVALTYPKLPDLDTLTDYRPKIPLRIFSADGVLIGEFGEERRNLVHFKDIP 79 ALL VA+ P LP +D LTDYRPKIPLR+++AD VLIGEFGEERR+ V +IP Sbjct: 51 CAALLLVAYTFLFVAPNLPSIDALTDYRPKIPLRVYTADNVLIGEFGEERRDFVSIGEIP 110 Query: 80 DIMKKAVLAIEDDRFYEHGGVDYQGILRATFSNL-SGGGGGASTITQQVARNFFLTSNEP 138 MK A++AIED+ FYEHGGVD G++RA +N+ GASTIT QVAR F LT Sbjct: 111 SSMKNAIIAIEDNNFYEHGGVDLLGVVRAGLANIVRSRSQGASTITMQVARTFLLTR--- 167 Query: 139 TFLQKATRKFFYEIPLAWKIENNLTKDQILEVYMNQIYLGQRAYGFASAAQIYFGKQLKD 198 +K + E+ LA++IE NLTKDQILE+YMNQIYLGQRAYGF SAA+IYFGK +KD Sbjct: 168 ---KKTYSRKLQEVLLAYRIEQNLTKDQILELYMNQIYLGQRAYGFGSAARIYFGKPIKD 224 Query: 199 ITIAEAAMLAGLPKAPSAYNPVVNPKRAHARQQYILLRMRQLGYITEAQYQEAKDEELRV 258 ++IAEAAMLAG+PKAP++ NPVVNPKRA RQQYIL RM +L +IT+AQY++A E+L V Sbjct: 225 LSIAEAAMLAGIPKAPASANPVVNPKRATERQQYILKRMHELNFITQAQYEKAAAEQLHV 284 Query: 259 KGDSSAFGMHAEYVAEMARQLIYAQYKDETYTRGLNVFTTITKADQDAAYIALRRGIIDY 318 D + F HAEY AE RQ +Y+QYKD+ YT G++V+TT+ KADQDAAY A+RRG++DY Sbjct: 285 LADGNRFRTHAEYAAEQVRQFMYSQYKDDIYTSGMSVYTTLIKADQDAAYEAVRRGVLDY 344 Query: 319 ERRHGYRGPEGYMDLPENASKEVVEDAVEVELADHPDSDDMVAAVVLEAKPKEITAMLAT 378 ++RHGYRGPE ++DLP++ +E + A+E L HPDSDD+ AAVV K +TA+ Sbjct: 345 DKRHGYRGPEAWIDLPKD--EEDRQQAIEEILVKHPDSDDLKAAVVTAVSAKSVTAVTLA 402 Query: 379 GEEISISGAGLGFGANLLSDKAPPQKKIRRGAIIRVFQDG-SNWIITQMPEVESAFVSVN 437 +EI ISG GL F A LS KA KKI+ G++IRV QD W I Q+PEV +AFV+VN Sbjct: 403 DDEIEISGEGLRFAAASLSAKAVEAKKIKPGSVIRVLQDSKKKWGIAQLPEVAAAFVAVN 462 Query: 438 SHDGAIRSLVGGFDFNRNKFNHVTQAWRQPGSSFKPFIYSSSLEKGLSPATIINDAPLTF 497 + DG IR++VGGFDF N+F+HVTQAWRQPGS+ KPF+YS++LEKG SP T+INDAPL Sbjct: 463 AQDGGIRAMVGGFDFALNQFDHVTQAWRQPGSTIKPFVYSAALEKGFSPGTLINDAPLAE 522 Query: 498 T---QTGGQVWQPKNYGGKFEGPISMRRALQKSINLVSIRILERVGVKYAQEYITRFGFD 554 + GG+ W P N +++GP++MR L+KS NLVSIRIL ++ YA E++T FGFD Sbjct: 523 DNPGEQGGKAWNPGNDNSQYDGPVTMRTGLKKSKNLVSIRILRKITPPYAIEHLTHFGFD 582 Query: 555 ADKNPPYLTLALGAGNVTPLQMVGAYSVFANGGYKINPYLITKVTDNNGEVLSQAKPATA 614 ADK P LTLALG G+VTPLQM GAY+VFANGG+K+ PYLI KV D G+VL +A A Sbjct: 583 ADKQPDNLTLALGTGSVTPLQMAGAYTVFANGGFKLAPYLIQKVVDVRGKVLLEANHPQA 642 Query: 615 DDESNRVIDARNAFIMDSMLRDVVRHGTAVKA-LSLKRTDLAGKTGTTNDSMDAWFAGYQ 673 DE+ R ID RNAFIM++MLRDVVR GT A L R+DLAGKTGTTND+MD WFAGY Sbjct: 643 GDETARAIDPRNAFIMNTMLRDVVRSGTGYMAGQRLGRSDLAGKTGTTNDAMDGWFAGYG 702 Query: 674 PGLTAIAWIGYDQPKSLGDRETGGGLALPVWISYMSKALKDVPNVDRKVPDGVIESGGEY 733 + A+AW+GYD+P++LG+RE G LALP+W+ YM AL+ + VP G+ ++ G++ Sbjct: 703 RDMVAVAWMGYDKPRTLGNREFGSTLALPIWVDYMRTALRGKAEIQNAVPAGLTQADGDW 762 Query: 734 YYAEFPPSAMVRDLGMGDHGGM 755 Y E+ VR + + + G Sbjct: 763 MYDEYAHGDAVRSVDIDEQKGF 784 >gi|134095915|ref|YP_001100990.1| monofunctional biosynthetic peptidoglycan transglycosylase [Herminiimonas arsenicoxydans] Length = 231 Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 69 RRNLVHFKDIPDIMKKAVLAIEDDRFYEHGGVDYQGILRATFSNLSGGG--GGASTITQQ 126 + V +K I + +K+A++A ED F H G+D+ + +A N+ G G STITQQ Sbjct: 61 KHKWVPYKRISNNLKRAIIASEDSNFSGHEGIDWDALEKAYEKNVRKGKVVAGGSTITQQ 120 Query: 127 VARNFFLTSNEPTFLQKATRKFFYEIPLAWKIENNLTKDQILEVYMNQIYLGQRAYGFAS 186 +A+N FL S + ++++K E+ + + +E + K++I E+Y+N + G +G + Sbjct: 121 LAKNLFL-SGDRSYIRKGQ-----EVVITYMLEYWMDKERIFEIYLNVVEWGVGVFGAEA 174 Query: 187 AAQIYFGKQLKDITIAEAAMLAGLPKAPSAYNPVVNPKRAHARQQYILLRM 237 AAQ Y+G ++ +AA LA + P Y+ R IL RM Sbjct: 175 AAQHYYGTSAAQLSAPQAARLAVMLPNPRFYDTHRGTAYLGRRTDLILRRM 225 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,514,162 Number of extensions: 66184 Number of successful extensions: 185 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 3 Length of query: 771 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 682 Effective length of database: 707,092 Effective search space: 482236744 Effective search space used: 482236744 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)