BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4046.p
         (394 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094713|ref|YP_001099788.1| putative 6-aminohexanoate-dimer...   164   1e-41
gi|134095990|ref|YP_001101065.1| 6-aminohexanoate-dimer hydrolas...   121   6e-29

>gi|134094713|ref|YP_001099788.1| putative 6-aminohexanoate-dimer
           hydrolase [Herminiimonas arsenicoxydans]
          Length = 408

 Score =  164 bits (414), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 167/331 (50%), Gaps = 21/331 (6%)

Query: 53  KVFQANPIARSSHPQPLPTALRALDIQVPWKDGSSLSVSDFLKSTATQAFVVVQDGRVVY 112
           K+F    I     P PLP + + L       +G    + D++        +V+++G++ Y
Sbjct: 56  KIFPTRVIKAGRKPSPLPLSDKQLTSLTFTSEGKKYDLPDYVALNRVVGLLVLKNGKIAY 115

Query: 113 ERYIDGDDANTRFASFSVAKSFVSALTGVALQQGKIKSLNEPIGRYLNRTEIAPAYANIT 172
           E Y  G   +TR+ S SVAKSFVS L G A++ G I S+++P+ +YL +     AY N++
Sbjct: 116 EHYDFGLKPDTRWMSMSVAKSFVSTLVGAAIKDGYITSVDDPVVKYLPQLA-GSAYQNVS 174

Query: 173 IGQLLDMRSGIDVQENYG--GSLVSPVVRMFVSTDLQRFIARRDGLRF-----TPGSRFE 225
           I  +L M SG+   E Y   GS    ++ + ++++ +  I   D L+       PG  F 
Sbjct: 175 IKDVLMMASGVKWNETYTDPGSDRRKLLELQIASNQKGGIF--DILKTLPKASEPGKNFN 232

Query: 226 YRSIDTLVLSRVLARATGMRLSDFAQQALWEPLGMEQDATWSVDSQEHGVEKAFCCLNTT 285
           Y + +T+++  ++  AT M L+D+  + +W P GM+ DA W +DS  +G E     +   
Sbjct: 233 YSTGETVLIGEIVQAATKMHLADYLSKKVWIPAGMQADAYWWLDS-PNGHEVGGSGILAV 291

Query: 286 ARDFSRLGLLYLDGGRVGQQQIVSPTWAAE-----PRQPLNNSNTLDYRNGWWI---PPG 337
            RDF+R G   L+G  V  ++IVS  W AE     P   +   N   Y+  WW      G
Sbjct: 292 MRDFARFGQFILNGAEVNGKKIVSDNWLAEATTAKPISGVTGKNGYGYQ--WWTMKPEAG 349

Query: 338 NAVDRDFSAIGVFGQYLYINPATRTVIVKLS 368
              ++ F   G+ GQYLYINP    V+V LS
Sbjct: 350 KVHEQAFMGRGIHGQYLYINPEENVVVVALS 380


>gi|134095990|ref|YP_001101065.1| 6-aminohexanoate-dimer hydrolase
           [Herminiimonas arsenicoxydans]
          Length = 444

 Score =  121 bits (304), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 167/360 (46%), Gaps = 49/360 (13%)

Query: 66  PQPLPTALRALDIQ----VPWKDGSSLSVSDFLKSTATQAFVVVQDGRVVYERYIDGDDA 121
           P PLP ALR  DI      P     S++  + L +  T   VV+  GR+VYE Y     A
Sbjct: 94  PVPLPRALRT-DIDAIRFTPIGASKSMTWKEALAANYTDGIVVLHRGRIVYEHYSGVLKA 152

Query: 122 NTRFASFSVAKSFVSALTGVALQQGKIKSLNEPIGRYLNRTEIA-PAYANITIGQLLDMR 180
           + +  + SV KS +  L    + +G++ +  + +  Y+   E+A  A+ N T+ Q+LDM 
Sbjct: 153 DGQHGAMSVTKSVIGTLGATLVSEGRLDA-GKRVAEYI--PELAQSAFGNATLRQILDMT 209

Query: 181 SGIDVQENY-------------GGSLVSPV----VRMFVSTDLQRFIARRDGLRFTPGSR 223
           + +   E+Y             G  L  P      R +  + LQR  A+        G+ 
Sbjct: 210 TALKYSEDYADPEAEVWAHAQAGNPLPKPKDYTGPRNYYES-LQRIQAQGQH-----GTA 263

Query: 224 FEYRSIDTLVLSRVLARATGMRLSDFAQQALWEPLGMEQDATWSVDSQEHGVEKAFCCLN 283
           F Y++++T VL  ++AR TG  +++   + +W+ LG EQDA ++VDS   G   A   LN
Sbjct: 264 FAYKTVNTDVLGWIIARVTGRSVAELLSERIWQRLGAEQDAYFTVDSI--GTPFAGGGLN 321

Query: 284 TTARDFSRLGLLYLDGGRVGQQQIVSPTWAAEPRQPLNNS----------NTLDYRNGWW 333
           T  RD +R G +  + G+   QQI+      + R+  +                YRN WW
Sbjct: 322 TGLRDLARFGEMLRNNGKFNGQQIIPKAVVDDIRRGGDKELFSKGGYPLLQGWSYRNMWW 381

Query: 334 IPPGNAVDRDFSAIGVFGQYLYINPATRTVIVKLSDYGVEQ---DEVLTLLAMRRIGHYL 390
           +   +  D  F A GV GQ ++I+P    VIV+ + + V     ++  TL A   +  +L
Sbjct: 382 VT--HDEDGAFMARGVHGQRIHIDPKAEMVIVRYASHPVASNAANDPTTLPAFNALAQHL 439


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 724,421
Number of extensions: 29181
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 394
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 310
Effective length of database: 723,567
Effective search space: 224305770
Effective search space used: 224305770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)