BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4045.p
         (259 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096097|ref|YP_001101172.1| regulatory protein [Herminiimon...   395   e-112

>gi|134096097|ref|YP_001101172.1| regulatory protein [Herminiimonas
           arsenicoxydans]
          Length = 233

 Score =  395 bits (1016), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 184/230 (80%), Positives = 205/230 (89%)

Query: 25  NTQSALVLFSGGQDSTTCLAWALSRYARVETIGFDYGQRHAIELQVRPALLQKMQTFSPD 84
           +  SALVLFSGGQDSTTCLAWAL+ YARVETIGFDYGQRHAIEL VRP LL+KM+  SP+
Sbjct: 3   SANSALVLFSGGQDSTTCLAWALTHYARVETIGFDYGQRHAIELAVRPFLLEKMRLISPE 62

Query: 85  WQARLGEDHMIDLSLIGKISDTALTRDVAIAMQDNGLPNTFVPGRNLLFMTVAATLAYRR 144
           W  RLG DHMIDLSLI KIS+TALT +V IAM +NGLPNTFVPGRNLLFMTVAAT+AYRR
Sbjct: 63  WDGRLGADHMIDLSLIAKISNTALTSNVEIAMLENGLPNTFVPGRNLLFMTVAATVAYRR 122

Query: 145 GLNVLVGGMCETDFSGYPDCRDDTMKALQVALNLGMATQLKVETPLMWIDKADTWSLAES 204
           GL+VLVGGMCETDFSGYPDCRDDTMKALQV LNLGMAT+LKVETPLMWIDKA TW +A+ 
Sbjct: 123 GLDVLVGGMCETDFSGYPDCRDDTMKALQVTLNLGMATKLKVETPLMWIDKAATWKMAQD 182

Query: 205 LGGSALVDLIRADTHTCYLGERGQLHDWGHGCGKCPACELRARGYQQYAA 254
           LGG+ L++L+R  THTCYLGERG+LHDWG+GCG CPAC+LRARGY  + A
Sbjct: 183 LGGTPLLNLVRTGTHTCYLGERGELHDWGYGCGNCPACKLRARGYADFIA 232


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 513,917
Number of extensions: 20392
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 179
Effective length of database: 736,747
Effective search space: 131877713
Effective search space used: 131877713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)