BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4044.p
         (260 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096096|ref|YP_001101171.1| hypothetical protein HEAR2937 [...   246   7e-67
gi|134096095|ref|YP_001101170.1| hypothetical protein HEAR2936 [...   181   3e-47

>gi|134096096|ref|YP_001101171.1| hypothetical protein HEAR2937
           [Herminiimonas arsenicoxydans]
          Length = 251

 Score =  246 bits (628), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 123/241 (51%), Positives = 164/241 (68%), Gaps = 7/241 (2%)

Query: 16  LAALPLAALLASAPAQAAEGPHPVEKRPFNLPPSAELHYAISAKQSGIDLKGEGLVKWSQ 75
           LA +  AA L SA AQA        K   N P SA+L+Y I+A QSG+ L G   + WS+
Sbjct: 14  LAGMTSAATL-SAFAQAPA------KFTVNPPASADLNYTINAHQSGLTLNGTATLHWSR 66

Query: 76  NKTAYSVTTETRAMLLGKILETSSEGAIDAYGLAPSRFIEKRLRREPTTTTFNREQNKIT 135
           +K  YS++TETRAMLLGKILE  SEGAIDA+GLAP    EKR+R++PTTTTFNRE   IT
Sbjct: 67  DKDRYSISTETRAMLLGKILEAKSEGAIDAHGLAPLTSTEKRMRKDPTTTTFNRETRSIT 126

Query: 136 FTESAESFPLQGGEQDRTGITWQFVAIARANAAKMKPGSEWKFFVAGPRDAEQWTFKVVG 195
           F+ S  S+P++GGEQDR  + WQ   IAR+  AK K G+     VAG +DA+QWTFKV  
Sbjct: 127 FSASDASYPIKGGEQDRNSVVWQLATIARSTPAKFKTGANISMMVAGQKDADQWTFKVGK 186

Query: 196 REKVKTAQGETEALHLFRNPPPDDQAQKLDIWLAPKMEWYPVRLKFTDPNGDYIEQVLDS 255
            E +KT+ G+ + + + +    +D++QK+DIW AP  EWYPVR++F +P+GD+IEQ +  
Sbjct: 187 SETIKTSLGDLKTIKVSKLVKGNDKSQKIDIWFAPGKEWYPVRIRFAEPSGDFIEQTIAK 246

Query: 256 V 256
           +
Sbjct: 247 I 247


>gi|134096095|ref|YP_001101170.1| hypothetical protein HEAR2936
           [Herminiimonas arsenicoxydans]
          Length = 358

 Score =  181 bits (459), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/215 (41%), Positives = 123/215 (57%), Gaps = 2/215 (0%)

Query: 44  FNLPPSAELHYAIS-AKQSGIDLKGEGLVKWSQNKTAYSVTTETRAMLLGKILETSSEGA 102
            +LPPSA+L Y +    + G  + G G + W  + + YSV  +   +L    L   S G 
Sbjct: 140 IDLPPSADLKYDVQKIPKEGAPMYGSGTISWHTDGSKYSVNGDF-GILFITALRFQSTGT 198

Query: 103 IDAYGLAPSRFIEKRLRREPTTTTFNREQNKITFTESAESFPLQGGEQDRTGITWQFVAI 162
           I+  G+ P  + EKR R+  T T F+RE+N I+F+ S  S+P  GGEQDR  I WQ   I
Sbjct: 199 IEDTGIVPELYSEKRFRKAETNTHFHRERNTISFSSSTLSYPRSGGEQDRASIIWQLAGI 258

Query: 163 ARANAAKMKPGSEWKFFVAGPRDAEQWTFKVVGREKVKTAQGETEALHLFRNPPPDDQAQ 222
            R ++ K   G+    FVAG R+AE W   V+G E++      T+A HL R P      Q
Sbjct: 259 GRGDSGKFAAGASIDLFVAGTRNAETWQILVIGLEEISIDGVSTQAWHLARAPRSGSHDQ 318

Query: 223 KLDIWLAPKMEWYPVRLKFTDPNGDYIEQVLDSVN 257
           KLDIWLAP+  WYPVRL++T+ NGDY++  L S+N
Sbjct: 319 KLDIWLAPEQNWYPVRLRYTESNGDYLDMTLTSLN 353


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 455,317
Number of extensions: 17690
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 180
Effective length of database: 736,747
Effective search space: 132614460
Effective search space used: 132614460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)