BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4043.p
         (334 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096095|ref|YP_001101170.1| hypothetical protein HEAR2936 [...   241   4e-65
gi|134096096|ref|YP_001101171.1| hypothetical protein HEAR2937 [...   153   1e-38

>gi|134096095|ref|YP_001101170.1| hypothetical protein HEAR2936
           [Herminiimonas arsenicoxydans]
          Length = 358

 Score =  241 bits (615), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 113/219 (51%), Positives = 148/219 (67%), Gaps = 3/219 (1%)

Query: 113 QYHTSAPPSALLQYDVTGT-KDQQPAYGRGSIDWHNEGNHYRVEGKAKALFFTLLNFTSV 171
            Y+   PPSA L+YDV    K+  P YG G+I WH +G+ Y V G    LF T L F S 
Sbjct: 137 HYNIDLPPSADLKYDVQKIPKEGAPMYGSGTISWHTDGSKYSVNGDFGILFITALRFQST 196

Query: 172 GELDAWGVSPELYTEQKGFKSATNTHFNRARNLVSFSASTISYPRRGGEQDRASLIWQLA 231
           G ++  G+ PELY+E++  K+ TNTHF+R RN +SFS+ST+SYPR GGEQDRAS+IWQLA
Sbjct: 197 GTIEDTGIVPELYSEKRFRKAETNTHFHRERNTISFSSSTLSYPRSGGEQDRASIIWQLA 256

Query: 232 AIGRGDATQIQPGAVIDLFVAGVRDGELWRVQVLGQEALDLPIGHLQTWHLVRMPKPGSY 291
            IGRGD+ +   GA IDLFVAG R+ E W++ V+G E + +     Q WHL R P+ GS+
Sbjct: 257 GIGRGDSGKFAAGASIDLFVAGTRNAETWQILVIGLEEISIDGVSTQAWHLARAPRSGSH 316

Query: 292 DDRVDIWLAPQHEWYPVRVRYTDLRPPGDYTQLDLSELK 330
           D ++DIWLAP+  WYPVR+RYT+    GDY  + L+ L 
Sbjct: 317 DQKLDIWLAPEQNWYPVRLRYTE--SNGDYLDMTLTSLN 353


>gi|134096096|ref|YP_001101171.1| hypothetical protein HEAR2937
           [Herminiimonas arsenicoxydans]
          Length = 251

 Score =  153 bits (387), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 105 SQAPATGKQYHTSAPPSALLQYDVTGTKDQQPAYGRGSIDWHNEGNHYRVEGKAKALFF- 163
           +QAPA   ++  + P SA L Y +   +      G  ++ W  + + Y +  + +A+   
Sbjct: 27  AQAPA---KFTVNPPASADLNYTINAHQSGLTLNGTATLHWSRDKDRYSISTETRAMLLG 83

Query: 164 TLLNFTSVGELDAWGVSPELYTEQKGFKSATNTHFNRARNLVSFSASTISYPRRGGEQDR 223
            +L   S G +DA G++P   TE++  K  T T FNR    ++FSAS  SYP +GGEQDR
Sbjct: 84  KILEAKSEGAIDAHGLAPLTSTEKRMRKDPTTTTFNRETRSITFSASDASYPIKGGEQDR 143

Query: 224 ASLIWQLAAIGRGDATQIQPGAVIDLFVAGVRDGELWRVQVLGQEALDLPIGHLQTWHLV 283
            S++WQLA I R    + + GA I + VAG +D + W  +V   E +   +G L+T  + 
Sbjct: 144 NSVVWQLATIARSTPAKFKTGANISMMVAGQKDADQWTFKVGKSETIKTSLGDLKTIKVS 203

Query: 284 RMPKPGSYDDRVDIWLAPQHEWYPVRVRYTDLRPPGDYTQLDLSELKP 331
           ++ K      ++DIW AP  EWYPVR+R+ +  P GD+ +  ++++ P
Sbjct: 204 KLVKGNDKSQKIDIWFAPGKEWYPVRIRFAE--PSGDFIEQTIAKITP 249


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.132    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 616,283
Number of extensions: 25226
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 252
Effective length of database: 730,157
Effective search space: 183999564
Effective search space used: 183999564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)