BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4041.p
         (285 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096094|ref|YP_001101169.1| hypothetical protein HEAR2935 [...   115   3e-27

>gi|134096094|ref|YP_001101169.1| hypothetical protein HEAR2935
           [Herminiimonas arsenicoxydans]
          Length = 192

 Score =  115 bits (288), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 103/211 (48%), Gaps = 59/211 (27%)

Query: 3   NQEQMPGAGSVADTIEFMKKMW----SSMGAPAMATPSLSVEDINKKIADLKTVASWLEL 58
           N   +PG  ++ADT+EF+KKMW    +S G P M  P+LS++++NK+IADLK V SWL +
Sbjct: 5   NMPNLPGFDAMADTLEFVKKMWGGAHASTGIPGMVIPTLSLDELNKQIADLKAVESWLNV 64

Query: 59  NLNMLKATIQTLEVQSATLSTLQAMSAIMASRQAPADETAADEEASTPPPFPFGFPMWPG 118
           N+NML+ TIQ LEVQ+AT+STLQAM   M      A    +D  ++  PP         G
Sbjct: 65  NMNMLRGTIQALEVQAATISTLQAMGKTMG-----AAAFGSDAHSNLVPP--------AG 111

Query: 119 AGAAPQETPEEEPAQAAAQDVAEEQVSQAEPPPPVEEEAVVPPAPDFQSAIANPNAWWNV 178
            GA       + PA  AAQ  A+                                 WWN+
Sbjct: 112 TGA-------DHPAPDAAQVAAD---------------------------------WWNL 131

Query: 179 LQEQFKHAVGNALA--GSTPDQEPLLKPAKP 207
           LQEQF  AV   +A  G     E  +   KP
Sbjct: 132 LQEQFNQAVSGVMAEEGGATQAESAMHAGKP 162


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.306    0.121    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 264,863
Number of extensions: 6170
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 285
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 204
Effective length of database: 733,452
Effective search space: 149624208
Effective search space used: 149624208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 128 (53.9 bits)