BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4038.p
         (175 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096082|ref|YP_001101157.1| hypothetical protein HEAR2923 [...   144   3e-36
gi|134093349|ref|YP_001098424.1| hypothetical protein HEAR0059 [...   103   5e-24

>gi|134096082|ref|YP_001101157.1| hypothetical protein HEAR2923
           [Herminiimonas arsenicoxydans]
          Length = 153

 Score =  144 bits (363), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 90/125 (72%), Gaps = 2/125 (1%)

Query: 27  HDYKLGQLDIGHPYARATVPGQPAAGAYVSIENKGSTPDRLVAVSSPVAKSGEIHTMAME 86
           HDY+ G + I HPYARATV GQ +  AY ++EN G   D L+AV SP AKS EIHTM+M 
Sbjct: 12  HDYRAGDIRIDHPYARATVAGQTSGSAYFTMENTGRQGDALIAVQSPAAKSAEIHTMSMT 71

Query: 87  GN-VMKMRELDGGLEVKPGQKITMQPGNGYHIMLMGLSKPLQAGDKVPVTLTFEKAGKVE 145
            + VM+MRE+D  +E+K  + + M PG GYHIML+GL+ PL+AGDK+P+ LTF KAGK  
Sbjct: 72  ADHVMRMREVD-SIELKAQETVKMLPGEGYHIMLIGLTAPLKAGDKLPLALTFRKAGKAN 130

Query: 146 VSFNV 150
           V+  V
Sbjct: 131 VTVAV 135


>gi|134093349|ref|YP_001098424.1| hypothetical protein HEAR0059
           [Herminiimonas arsenicoxydans]
          Length = 153

 Score =  103 bits (257), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 5/127 (3%)

Query: 17  LLAAAPLSQAHDYKLGQLDIGHPYARATVPGQPAAGAYVSIENKGSTPDRLVAVSSPVAK 76
           +   A LS        Q+ +  P+ RATVP Q A GA++ + +K  T  RLVAVSSP+A+
Sbjct: 4   IFLTALLSAFSFASFAQVTVTDPWVRATVPAQKATGAFMQLNSK--TDARLVAVSSPLAR 61

Query: 77  SGEIHTMAMEGNVMKMRELDGGLEVKPGQKITMQPGNGYHIMLMGLSKPLQAGDKVPVTL 136
             EIH MAM+ N+M+MR++   L++  G+ +T++PG  YH+M   L  P++ GD VP+TL
Sbjct: 62  -AEIHEMAMQDNIMRMRQI-PALDLPAGKTVTLKPG-SYHVMFFDLKNPIREGDVVPLTL 118

Query: 137 TFEKAGK 143
            FE   K
Sbjct: 119 VFEDRNK 125


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 282,182
Number of extensions: 10835
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 99
Effective length of database: 749,927
Effective search space: 74242773
Effective search space used: 74242773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)