BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4033.p (264 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 91 7e-20 gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding pr... 89 3e-19 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 85 3e-18 gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-b... 82 3e-17 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 80 9e-17 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 90.5 bits (223), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 109/209 (52%), Gaps = 12/209 (5%) Query: 21 ALRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDSGKIEIDGTDVTRKQAWDRAG 80 AL +SLE P G+ A++G +G GK+T L I+G D G++ +DG D + + +R Sbjct: 17 ALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASARHVRER-- 74 Query: 81 MVARVFQDPMAGTCEALTIEENMALAMARGRRRGFQFAIRGKMRELFREKLA-ILNLGLE 139 V VFQ + +T+ EN+A + R R A + +EK+ +L L Sbjct: 75 QVGFVFQH--YALFKHMTVFENIAFGL---RVRP---AATRPSESVIKEKVTKLLELVQL 126 Query: 140 NRLTDRIG-LLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVAEG 198 + L DR LSGGQRQ ++L A R+LLLDE ALD K + ++ E Sbjct: 127 DWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186 Query: 199 KLTTMMVTHSMRQALDYGDRTVMLHQGRV 227 +T++ VTH +AL+ D+ V++++G V Sbjct: 187 HVTSIFVTHDQEEALEVADQIVLMNKGHV 215 >gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding protein pxtA [Herminiimonas arsenicoxydans] Length = 262 Score = 88.6 bits (218), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 38/246 (15%) Query: 1 MLKATDLKITFNPGTPIENPALRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDS 60 M++ D+ + + + ALR SL++ GQF ++G++GAGKST L I+ + Sbjct: 1 MIQLNDVSVRYG-----DTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSA 55 Query: 61 GKIEIDGTDVTRKQAWDRAGMVARVFQDPMAGTCEALTIEENMALAMARGRRRGFQFAIR 120 G I++ G + + + RV Q T + +++ +A RR Q + Sbjct: 56 GTIDVVGLGLLQNR---------RVLQAHRRQT--GMVFQQHQLIA----RRTALQNVLM 100 Query: 121 GKM------RELFREKLAILNLGLENRLTDRIGLL----------SGGQRQAVSLLMASL 164 G++ R LF +GL R DR+GLL SGGQ+Q V + A Sbjct: 101 GRLGYHTTLRSLFPLSQEEQRIGL--RALDRVGLLHKALTRVDQLSGGQQQRVGIARALT 158 Query: 165 QPSRILLLDEHTAALDPKTAAFVLELTAKIVAEGKLTTMMVTHSMRQALDYGDRTVMLHQ 224 Q +++L DE A+LDP T+ VLE+ +I E ++ ++ H + AL Y DR V L Sbjct: 159 QQPKLILADEPVASLDPATSEKVLEILRQICKEDGISAVVSLHQVDLALKYSDRIVGLAH 218 Query: 225 GRVVLD 230 G+V+ D Sbjct: 219 GKVMFD 224 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 85.1 bits (209), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 110/209 (52%), Gaps = 9/209 (4%) Query: 22 LRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDSGKIEIDGTDVTRKQAWDRAGM 81 +R ++L+V +G+ + ++G NGAGK+T I G + D+G+IE+DG D++R+ RA + Sbjct: 20 VRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELDGVDISRQPIHKRAQL 79 Query: 82 VARVFQDPMAGTCEALTIEENMALAMARGRRRGFQFAIRGKMRELFREKLAIL--NLGLE 139 + A L++E+N+ + R G + +E ++L L +L +E Sbjct: 80 -GLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALS-----KEQIEQRLDTLLADLQIE 133 Query: 140 NRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVAEGK 199 ++ LSGG+R+ V + A R +LLDE A +DP A ++ + + E Sbjct: 134 KLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDP-IAVIEIQRIVRFLKERG 192 Query: 200 LTTMMVTHSMRQALDYGDRTVMLHQGRVV 228 + ++ H++R+ L DR +++QG V+ Sbjct: 193 IGVLITDHNVRETLGICDRAYIINQGAVL 221 >gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-binding/membrane protein [Herminiimonas arsenicoxydans] Length = 655 Score = 82.0 bits (201), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 120/247 (48%), Gaps = 19/247 (7%) Query: 17 IENPALRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDSGKIEIDGTDVTR---- 72 +E L G+ L++ G+FVA++G++G+GKST +N + +G G DV+ Sbjct: 31 LEVEVLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDRPTTGSYYFMGRDVSDFGRD 90 Query: 73 KQAWDRAGMVARVFQDPMAGTCEALTIEENMAL-AMARGRRRGFQFAIRGKMRELFREKL 131 ++A R VFQ + + EN+ + AM G + A R + Sbjct: 91 ERALLRRDDFGFVFQS--YNLIASASAAENVEVPAMYSGLPPAERHA---------RAQA 139 Query: 132 AILNLGLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELT 191 + LGL +R R LSGGQ+Q VS+ A + RI+L DE T ALD K+ V++L Sbjct: 140 LLTELGLADRSHHRPNQLSGGQQQRVSISRALMNGGRIILADEPTGALDSKSGQDVMKLL 199 Query: 192 AKIVAEGKLTTMMVTHSMRQALDYGDRTVMLHQGRVVLDVSGPERAGLDVPDLLKMFEQT 251 A + A G T +++TH+ ++ D+ R + + G ++ D GP D ++ Sbjct: 200 ADLSARGH-TVLLITHA-KEVADHAQRLIEIKDGHILSD-PGPAHPSPTQTDFVRPVVAG 256 Query: 252 RGEKLSD 258 G +L+D Sbjct: 257 IGSRLTD 263 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 80.5 bits (197), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 18/208 (8%) Query: 21 ALRGLSLEVPTGQFVAVIGSNGAGKSTFLNAISGDLLVDSGKIEIDGTDVTRKQAWDRAG 80 AL ++L V G+F+ +IG +G GKST LN I+G L +G + + G + +RA Sbjct: 27 ALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAG-LTQSTGGMLLCGNREIAGPSPERA- 84 Query: 81 MVARVFQDPMAGTCEALTIEENMALAMAR--GRRRGFQFAIRGKMRELFREKLAILNLGL 138 VFQ+ LT EN+ LA+ R G+ G + K+R R L+++ GL Sbjct: 85 ---VVFQN--HSLLPWLTCYENVYLAVERVFGKVEG-----KAKLRARTRAALSLV--GL 132 Query: 139 ENRLTDRIGLLSGGQRQAVSLLMA-SLQPSRILLLDEHTAALDPKTAAFVLELTAKIVAE 197 + R +SGG +Q V + A S++P ++LL+DE ALD T A + + KIVA Sbjct: 133 THAEQKRPNEISGGMKQRVGIARALSMEP-KVLLMDEPFGALDALTRAHLQDELLKIVAA 191 Query: 198 GKLTTMMVTHSMRQALDYGDRTVMLHQG 225 T +MVTH + +A+ D+ VML G Sbjct: 192 TGSTVVMVTHDVDEAVLLSDKIVMLTNG 219 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 468,312 Number of extensions: 18271 Number of successful extensions: 229 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 180 Number of HSP's successfully gapped: 44 Length of query: 264 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 184 Effective length of database: 736,747 Effective search space: 135561448 Effective search space used: 135561448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)