BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4031.p
         (283 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096080|ref|YP_001101155.1| amidophosphoribosyltransferase ...   263   5e-72

>gi|134096080|ref|YP_001101155.1| amidophosphoribosyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 247

 Score =  263 bits (673), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 142/245 (57%), Positives = 164/245 (66%), Gaps = 7/245 (2%)

Query: 39  WLQRLLAQLPQLLPSSCALCGAAGRETLCAPCHKRFYTRQHRRCIQCAMPMPVTGK-ELR 97
           W +  +  LP  LPSSCALCG + R+ LC  C +RF+ +   RC+QCA P+P TG    R
Sbjct: 8   WSRHFIRHLPTALPSSCALCGFSSRQALCVDCEQRFFHQTPPRCLQCASPLPHTGALAQR 67

Query: 98  CGACLKDRPAFDATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIYDATRRNPVPGSD 157
           CGACL D PAFDATIVA DY AP D L LALKFG  L LAPL A ++ DA  R P     
Sbjct: 68  CGACLGDPPAFDATIVAGDYAAPVDHLVLALKFGNRLALAPLFASMLRDAILREPA---- 123

Query: 158 VQLPLPTVLAPVPLGLARLQERGFNQALEIARPLGQLLDIPVQARLLERKKETQAQSALP 217
               +P +L  VPLG  RL ERGFNQALEIA+PL Q + IP+  +LLER ++T  QS L 
Sbjct: 124 --FAMPALLTAVPLGEKRLSERGFNQALEIAKPLAQAIAIPLAPQLLERTRDTLMQSMLH 181

Query: 218 VGARARNVRSAFALPFAAMDQVRGLHVGIVDDVMTTGATLNEVAIVLKRHGARRVTNLVF 277
              R RN+R AF LP  A   VRG HVG+VDDVMTTG TLNE+A  LKRHGA RVTNLVF
Sbjct: 182 PAERHRNMRHAFVLPANADVLVRGRHVGVVDDVMTTGVTLNEIAATLKRHGAVRVTNLVF 241

Query: 278 ARTLP 282
           ART P
Sbjct: 242 ARTPP 246


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 446,174
Number of extensions: 15822
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 202
Effective length of database: 733,452
Effective search space: 148157304
Effective search space used: 148157304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)