BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4030.p
         (314 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096079|ref|YP_001101154.1| methyltransferase [Herminiimona...   386   e-109
gi|134094878|ref|YP_001099953.1| biotin synthesis protein BioC [...   110   1e-25

>gi|134096079|ref|YP_001101154.1| methyltransferase [Herminiimonas
           arsenicoxydans]
          Length = 319

 Score =  386 bits (991), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/325 (63%), Positives = 252/325 (77%), Gaps = 17/325 (5%)

Query: 1   MSLPP--PSAS---AKLSAPIDLPLVRRRFGQPQRVAESDFLRREVSARMQERLALVKID 55
           MSL P  P +S   +KLSAPIDL  VR  F  P R+ ES+FLRREV+ARM ERLALV+I 
Sbjct: 1   MSLNPYAPVSSLPDSKLSAPIDLNRVRSLFANPARIVESNFLRREVAARMHERLALVRIA 60

Query: 56  PREVLDAGCGEGADLPVLQKRYPQAQVIGLDGAYAMLAKAADHQRGAQTAMNRLFGSINK 115
           P+ VLDAGCGEGADL  LQK +P+A ++GLD A AMLA A   Q  A++ MNRL   + +
Sbjct: 61  PQYVLDAGCGEGADLATLQKHFPEAAMLGLDAAPAMLAAAMQAQMAARSTMNRL---LQQ 117

Query: 116 WLGSPPSGNGP------QLACADFARLPLAPNALDLVWSNLALHWHPQPDRVFAEWRRVL 169
           WL   P+G G        + C DFA+LPL  +A+DLVWSNLALHWHPQPDRVFAEWRRVL
Sbjct: 118 WL---PAGIGKGKNPAASVLCGDFAQLPLRMDAVDLVWSNLALHWHPQPDRVFAEWRRVL 174

Query: 170 RVEGLLMFSCFGPDTLREVRSAFEQIDLAPHTLPFVDMHDFGDMLVNAGFSTPVMDMETI 229
           R +GLLMFSCFGPDT +E+R+AF+  D APH LPFVDMHDFGDMLVNAGFSTPVMDMET+
Sbjct: 175 RQDGLLMFSCFGPDTFKELRAAFDVADGAPHALPFVDMHDFGDMLVNAGFSTPVMDMETL 234

Query: 230 TVTYETPQRLLEDVRAWGGNPLESRRRSMMSRSQYQRLLAAFEAMRKPDGKIPLSFEIVY 289
           TVTY + ++L++DVRAWGGNPL++RRR ++ R  +QR++   E  R+ DGKIPL+FE++Y
Sbjct: 235 TVTYGSVEKLMDDVRAWGGNPLDTRRRGLLGRRAWQRVVQVLEQSRQADGKIPLTFEVIY 294

Query: 290 GHAFRPVPKTTAAGESIIRFERPPR 314
           GHAFRP PKT A+GESI+RF+ P +
Sbjct: 295 GHAFRPAPKTRASGESIVRFDWPKK 319


>gi|134094878|ref|YP_001099953.1| biotin synthesis protein BioC
           [Herminiimonas arsenicoxydans]
          Length = 260

 Score =  110 bits (274), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 113/254 (44%), Gaps = 30/254 (11%)

Query: 37  LRREVSARMQERLALVKIDPREVLDAGCGEGADLPVLQKRYPQAQVIGLDGAYAMLAKAA 96
            +++V+AR+ + L    I    VLD GCG G    +L + +P A ++  D +  M+ +A 
Sbjct: 26  FQQQVAARLAQLLP--AIPATCVLDGGCGTGTSSALLTRHWPDALLLACDLSPEMVRQAH 83

Query: 97  DHQRGAQTAMNRLFGSINKWLGSPPSGNGPQLACADFARLPLAPNALDLVWSNLALHWHP 156
             Q  A                           C D  +LP +    D+VWS+L L W  
Sbjct: 84  ARQLTA--------------------------VCGDLEQLPFSKACFDVVWSSLVLQW-C 116

Query: 157 QPDRVFAEWRRVLRVEGLLMFSCFGPDTLREVRSAFEQIDLAPHTLPFVDMHDFGDMLVN 216
           QP   + E +RVL+  G L+FS     +L E+ S F +ID     LPF       D L  
Sbjct: 117 QPQLAYPELQRVLKHGGRLLFSTLTSGSLHELESTFGEIDRHRRVLPFASEQQVVDALYA 176

Query: 217 AGFSTPVMDMETITVTYETPQRLLEDVRAWGGNPLESRRR-SMMSRSQYQRLLAAFEAMR 275
           AGF       E     +   + LL  +R  G N   + RR  MM ++Q+Q     +E +R
Sbjct: 177 AGFEHVQCQAERWVTQHADLKTLLTSIRGIGANQTGAARRPGMMGKTQWQAAQVRYENLR 236

Query: 276 KPDGKIPLSFEIVY 289
             DG +PL++ +++
Sbjct: 237 DADGMLPLTYSLLF 250


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 601,454
Number of extensions: 25065
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 314
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 232
Effective length of database: 730,157
Effective search space: 169396424
Effective search space used: 169396424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)