BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4027.p (539 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096077|ref|YP_001101152.1| cytochrome c oxidase polypeptid... 944 0.0 gi|134095869|ref|YP_001100944.1| cytochrome o ubiquinol oxidase ... 395 e-111 gi|134094347|ref|YP_001099422.1| putativecytochrome BB3 subunit ... 383 e-107 >gi|134096077|ref|YP_001101152.1| cytochrome c oxidase polypeptide I [Herminiimonas arsenicoxydans] Length = 533 Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/509 (91%), Positives = 486/509 (95%) Query: 31 GWRRWLLATNHKDIGTLYLWFSFTMLLSGGVLALLIRAELFQPGLQFFRPEFFNQLTTMH 90 GWRRW+ ATNHKDIGTLYLWFSFTMLLSGG LA+LIRAELFQPGLQ +PEFFNQLTTMH Sbjct: 25 GWRRWVYATNHKDIGTLYLWFSFTMLLSGGFLAMLIRAELFQPGLQLMQPEFFNQLTTMH 84 Query: 91 GLVMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPPAALLLAGSFLVPGGA 150 G++MVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPPAA+LL SF VPGGA Sbjct: 85 GIMMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPPAAVLLVLSFFVPGGA 144 Query: 151 TAAGWTLYAPLSTQMGPGMDMGIFAMHIMGASSIMGSINIIVTILNMRAPGMTLMKMPMF 210 TAAGWTLYAPLSTQMGPGMDM IFA+HIMGASSIMGSINIIVT+LNMRAPGMTLMKMPMF Sbjct: 145 TAAGWTLYAPLSTQMGPGMDMAIFALHIMGASSIMGSINIIVTVLNMRAPGMTLMKMPMF 204 Query: 211 CWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFGHPEVY 270 CWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFGHPEVY Sbjct: 205 CWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFGHPEVY 264 Query: 271 IMILPAFGIVSQIIPAFARKPLFGYASMVYATASIAILSFIVWAHHMFTTGMPVTAQLFF 330 IMILPAFGIVS IIPAFARK LFGYASMVYATASIAILSF+VWAHHMFTTGMPVTAQLFF Sbjct: 265 IMILPAFGIVSHIIPAFARKQLFGYASMVYATASIAILSFMVWAHHMFTTGMPVTAQLFF 324 Query: 331 MYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILAVTPIDI 390 MYATMLIAVPTGVKIFNW+ATMWRGSMTFETPMLF++GFIFVFT+GGFTGLILAVTPIDI Sbjct: 325 MYATMLIAVPTGVKIFNWVATMWRGSMTFETPMLFAIGFIFVFTIGGFTGLILAVTPIDI 384 Query: 391 QMQDTYYVVAHFHYVLVAGSLFALFAGYYYWGPKWTGFMYNEWRGKFHFWASLITFNITF 450 Q+QDTYYVVAHFHYVLVAGSLFALFAG+YYWGPKWTGFMYNE RGK HFW SLI FNITF Sbjct: 385 QLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNETRGKIHFWGSLILFNITF 444 Query: 451 FPMHFLGLAGMPRRYADYPAQFTDFNMIASIGAFGFGLSQVYFLFFVVIPSIKGGKKAEA 510 FPMHFLGLAGMPRRYADYPAQFTDFN+IASIG GFGL QVYFLF VVIPSI+GG A A Sbjct: 445 FPMHFLGLAGMPRRYADYPAQFTDFNVIASIGGLGFGLMQVYFLFAVVIPSIRGGTPAAA 504 Query: 511 KPWEGAEGLEWTVPSPAPFHTFEEPPVVK 539 KPW+GAEGLEWTVPSPAPFHTFE PP VK Sbjct: 505 KPWDGAEGLEWTVPSPAPFHTFETPPTVK 533 >gi|134095869|ref|YP_001100944.1| cytochrome o ubiquinol oxidase subunit I [Herminiimonas arsenicoxydans] Length = 667 Score = 395 bits (1016), Expect = e-111, Method: Compositional matrix adjust. Identities = 210/516 (40%), Positives = 308/516 (59%), Gaps = 11/516 (2%) Query: 32 WRRWLLATNHKDIGTLYLWFSFTMLLSGGVLALLIRAE---LFQPGLQFFRPEFFNQLTT 88 WR W+ + +HK IG +Y+ ML+ G AL++RA+ F F P ++Q+ T Sbjct: 55 WRDWITSIDHKKIGIMYMILGLVMLMRGFADALMMRAQQAMAFGDNAGFLPPHHYDQIFT 114 Query: 89 MHGLVMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPPAALLLAGSFLVPG 148 HG++M+F MP G N+++PLQIGA D+AF +NNFSFW+ A+L+ S V G Sbjct: 115 AHGVIMIFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGAVLIMVSLFV-G 173 Query: 149 GATAAGWTLYAPLSTQMGP---GMDMGIFAMHIMGASSIMGSINIIVTILNMRAPGMTLM 205 GW Y PLS + G+D I+A+ + G + + IN+I TI+ MRAPGM +M Sbjct: 174 EFAKTGWLAYPPLSGILASPDVGVDYYIWALQVAGVGTTLSGINLIATIVKMRAPGMDMM 233 Query: 206 KMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFG 265 KMP+F WT L T L++A PVL + M DR T FF GGG+ +MY ++ W +G Sbjct: 234 KMPVFTWTALCTNVLIVASFPVLTAVLAMLSLDRMVDTHFFTNDGGGNAMMYVNLIWIWG 293 Query: 266 HPEVYIMILPAFGIVSQIIPAFARKPLFGYASMVYATASIAILSFIVWAHHMFTTGMPVT 325 HPEVYI+ILP FG+ S+++ F+ K +FGY SMVYAT I ILS++VW HH FT G + Sbjct: 294 HPEVYILILPLFGVFSEVVSTFSAKRIFGYTSMVYATVVITILSYMVWLHHFFTMGSGAS 353 Query: 326 AQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILAV 385 FF TM+I++PTG K+FNW+ TM++G +TFE PM++++GF+ F +GG TG++LAV Sbjct: 354 VNSFFGITTMIISIPTGAKVFNWLFTMYKGRITFELPMMWTIGFMITFVLGGMTGVMLAV 413 Query: 386 TPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYYWGPKWTGFMYNEWRGKFHFWASLIT 445 P D + ++ +++AHFH V++ G +F +FA YW PK GF + + GK FW L+ Sbjct: 414 PPADFVLHNSLFLIAHFHNVIIGGVVFGVFAAINYWFPKAFGFKLDVFWGKCSFWFWLVG 473 Query: 446 FNITFFPMHFLGLAGMPRRYADYPA-QFTDFNMIASIGA--FGFGLSQVYFLFFVVIPSI 502 F + F P++ LG+ G+ RR + + + IA++GA G++ + F+V Sbjct: 474 FWMAFMPLYILGMMGVTRRMSHFSDPSLQIWFQIAAVGAVLIALGIASMLIQFYVSFKRR 533 Query: 503 KGGKKAEAKPWEGAEGLEWTVPSPAPFHTFEEPPVV 538 + PW G LEW+ SP P + F P V Sbjct: 534 HELRDVTGDPWNG-RTLEWSTSSPPPDYNFAFTPKV 568 >gi|134094347|ref|YP_001099422.1| putativecytochrome BB3 subunit 1 [Herminiimonas arsenicoxydans] Length = 586 Score = 383 bits (983), Expect = e-107, Method: Compositional matrix adjust. Identities = 217/533 (40%), Positives = 300/533 (56%), Gaps = 25/533 (4%) Query: 21 HDDHSHDHPHGWRRWLLATNHKDIGTLYLWFSFTMLLSGGVLALLIRAELFQPG-LQFFR 79 HD H W +++ + +HK I Y + + L G L+ L+R +L PG F Sbjct: 6 HDTQDHVPQGFWTKYVWSQDHKVIAIQYASVAIAVGLVGVALSNLMRLQLGFPGRFAFID 65 Query: 80 PEFFNQLTTMHGLVMVFGAIMPAFVG-FANWMIPLQIGASDMAFARMNNFSFWLLPPAAL 138 + Q TMHG++MV + F+G F N++IPL +GA DM F +N SFW+ + L Sbjct: 66 AAHYYQFMTMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYLNMLSFWVYLLSVL 125 Query: 139 LLAGSFLVPGGATAAGWTLYAPLSTQMG-PGMDMGIFAMH----IMGASSIMGSINIIVT 193 +L SF V GG T AGWTLY P + G PG + GI M I ++ MG +N + T Sbjct: 126 VLMASFFVAGGPTGAGWTLYPPQAILQGTPGHEWGIILMLVSLLIFIVAATMGGLNYVTT 185 Query: 194 ILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAA---- 249 +L R GMTL++MP+ W + L + P L + M L D+ GTSFF A Sbjct: 186 VLQARTEGMTLLRMPLTVWGIFVATILALLAFPALFVSGIMMLLDKTLGTSFFMPAIVSM 245 Query: 250 ------GGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKPLFGYASMVYATA 303 GG P+++QH+FWFFGHPEVYI+ LPAFGIVS +I ARK +FGY MV+A Sbjct: 246 GQVTQYTGGSPLLFQHLFWFFGHPEVYIVALPAFGIVSDLISVHARKSIFGYRMMVWAIL 305 Query: 304 SIAILSFIVWAHHMFTTGMPVTAQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFETPM 363 +I +LS +VWAHHMF +GM FF T++IAVPT +K++NW+ T+WRG + PM Sbjct: 306 AIGVLSVVVWAHHMFVSGMNPYFGFFFATTTLIIAVPTAIKVYNWLLTLWRGDIHLSVPM 365 Query: 364 LFSVGFIFVFTMGGFTGLILAVTPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYYWGP 423 LF++ FI F +GG TGL L +DI + +TY+VVAHFH V+ + +F G Y+W P Sbjct: 366 LFALAFISTFLIGGLTGLFLGNVSVDIPLSNTYFVVAHFHMVMGVAPILVVFGGIYHWYP 425 Query: 424 KWTGFMYNEWRGKFHFWASLITFNITFFPMHFLGLAGMPRRYADY------PAQFTDFNM 477 K TG M N+ GK HFW + + FFPMH+LG+ GMPRRY ++ P N Sbjct: 426 KVTGRMLNDALGKLHFWITFVGTYAIFFPMHYLGMLGMPRRYYNFDGYQFIPQSAHTLNT 485 Query: 478 IASIGAFGFGLSQVYFLFFVVIPSIKGGKKAEAKPWEGAEGLEWTVPSPAPFH 530 +I A +Q+ F+ ++ G +A++ PW A LEW P P H Sbjct: 486 FITIAALIVATAQLVFVANLIWSRFYGA-RADSNPWRAAS-LEWQTPQTPPVH 536 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.330 0.142 0.479 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,045,954 Number of extensions: 45499 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 161 Number of HSP's successfully gapped: 4 Length of query: 539 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 453 Effective length of database: 716,977 Effective search space: 324790581 Effective search space used: 324790581 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 131 (55.1 bits)