BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4025.p
         (199 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096075|ref|YP_001101150.1| cytochrome C oxidase assembly p...   273   5e-75

>gi|134096075|ref|YP_001101150.1| cytochrome C oxidase assembly
           protein [Herminiimonas arsenicoxydans]
          Length = 192

 Score =  273 bits (698), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 156/192 (81%), Gaps = 2/192 (1%)

Query: 8   DQEQPERGLNRVMLRKLVVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDATVEAPANS 67
           +Q +    LN  M  KL V+AV+MFGFGY L+P+Y++ICE+TGVN LT ++  V+   NS
Sbjct: 3   NQTESTGKLNGRMFGKLAVIAVMMFGFGYLLVPIYKQICELTGVNILTSQEMKVKPIDNS 62

Query: 68  QVDKSRVVTVEFDGNAQGPWRFRPTVASLQVHPGEMTQVTYEVVNTQARNVDAQAIPSYA 127
           Q+DKSR +TVEFD N  GP+RFRPTV+S+QVHPGEM+QV YEVVNTQAR+V+AQAIPSYA
Sbjct: 63  QIDKSRTITVEFDANTTGPFRFRPTVSSMQVHPGEMSQVLYEVVNTQARSVEAQAIPSYA 122

Query: 128 PQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKDVTTITLSYTFFEINGKDK 187
           PQQ+AA FKKVECFCF Q+TLGPNQAKQMPVVFY+DP LP+DV TITLSYTFFE+   +K
Sbjct: 123 PQQAAAHFKKVECFCFQQETLGPNQAKQMPVVFYLDPALPRDVKTITLSYTFFEVAKPEK 182

Query: 188 AAGSTVPTGSAG 199
            A  TV   +AG
Sbjct: 183 QA--TVKPATAG 192


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 355,491
Number of extensions: 13105
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 122
Effective length of database: 746,632
Effective search space: 91089104
Effective search space used: 91089104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)