BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4023.p
         (286 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096074|ref|YP_001101149.1| cytochrome c oxidase polypeptid...   437   e-124
gi|134094349|ref|YP_001099424.1| cytochrome-C oxidase subunit II...    96   2e-21
gi|134095868|ref|YP_001100943.1| cytochrome o ubiquinol oxidase ...    73   2e-14

>gi|134096074|ref|YP_001101149.1| cytochrome c oxidase polypeptide
           III [Herminiimonas arsenicoxydans]
          Length = 288

 Score =  437 bits (1123), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/286 (76%), Positives = 248/286 (86%)

Query: 1   MSSQQAKAPHYFVPGPSRWPMMAGISMLITMIGASAWVNGVVWAPYVNILGILMVLVVLY 60
           MS+Q A AP+YFVPGPSRWP  AG+S+L  M+GASAWVN   W  Y+   G+L  L VLY
Sbjct: 3   MSAQHANAPYYFVPGPSRWPAAAGMSLLTLMLGASAWVNDASWGSYLTWAGLLGFLFVLY 62

Query: 61  YWFGDAIRESESGLYSERIDLSYRWSMSWFIFSEVMFFAAFFGALFYARSITMPWLADLD 120
            WFGDAI ESESG+Y++RID SYRWSMSWFIFSE+MFF AFFGALFYARSI+MPWL DLD
Sbjct: 63  KWFGDAIGESESGMYNKRIDASYRWSMSWFIFSEIMFFGAFFGALFYARSISMPWLGDLD 122

Query: 121 HKLLWPDFTGQWGNVGPAGTVENFTTMGPFPIPTINTLLLLSSGVTLTISHHAMRAGHRT 180
           HK+LWPDF   WGNVGPAGTVE FTTMGPF IPTINT LLL+SGVTLT+SHHA+R   R 
Sbjct: 123 HKILWPDFAAHWGNVGPAGTVEAFTTMGPFWIPTINTALLLTSGVTLTLSHHALRENQRG 182

Query: 181 QTAVWLFLTILLGAVFMGFQAYEYIHAYSELNLKLSSGIYGSTFFMLTGFHGFHVTMGAI 240
           +TA WL  T+LLGAVFMGFQ YEY+HAYS+LNLKL+SG+YGSTFF+LTGFHGFHVT+GAI
Sbjct: 183 KTAFWLAATVLLGAVFMGFQVYEYMHAYSDLNLKLTSGVYGSTFFLLTGFHGFHVTLGAI 242

Query: 241 MLSVVLYRLLRGHFTPTHHFAFEGAAWYWHFVDVVWLGLYVVVYWL 286
           MLSVVLYR+++GHFT  +HFAFEGAAWYWHFVDVVWLGLYVVVYWL
Sbjct: 243 MLSVVLYRVMKGHFTADNHFAFEGAAWYWHFVDVVWLGLYVVVYWL 288


>gi|134094349|ref|YP_001099424.1| cytochrome-C oxidase subunit III
           oxidoreductase protein [Herminiimonas arsenicoxydans]
          Length = 230

 Score = 95.9 bits (237), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 24/228 (10%)

Query: 65  DAIRESESGLYSERIDLSYRW--SMSW-FIFSEVMFFAAFFGALFYARSITMPWLADLDH 121
           D  R+  +   S+R      W  +M W F+ S+   F+ F       R  T         
Sbjct: 17  DGWRQLVADWSSDRQAFQVSWGKAMMWIFLLSDTFIFSCFLTGYMTVRLTT--------- 67

Query: 122 KLLWPDFTGQWGNVGPAGTVENFTTMGPFPIPTINTLLLLSSGVTLTISHHAMRAGHRTQ 181
                  T  W N     ++    T  P  +  I T +L+SS  T+ ++ +     +R  
Sbjct: 68  -------TAAWPNPSEVFSLNIGGTDMPLLLIAIMTFVLISSSGTMAMAVNYAYRRNRVT 120

Query: 182 TAVWLFLTILLGAVFMGFQAYEYIHAYSE----LNLKLSSGIYGSTFFMLTGFHGFHVTM 237
           T + +  T LLGA F+G QA+E+    +E        + +  +GSTFFM+TGFHG HV+ 
Sbjct: 121 TGILMLATALLGASFVGMQAFEWSKLIAEGVRPWGNPMGAAQFGSTFFMITGFHGLHVSA 180

Query: 238 GAIMLSVVLYRLLRGHFTPTHHFAF-EGAAWYWHFVDVVWLGLYVVVY 284
           G I L +V  R+LRG +  T ++   E A  YWHFVD+VW+ ++ + Y
Sbjct: 181 GVIYLVIVASRVLRGRYEKTGNYQIVEIAGLYWHFVDLVWVFIFALFY 228


>gi|134095868|ref|YP_001100943.1| cytochrome o ubiquinol oxidase
           subunit III [Herminiimonas arsenicoxydans]
          Length = 214

 Score = 72.8 bits (177), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 12/154 (7%)

Query: 136 GPAGTVENFTTMGPFPIPTINTLLLLSSGVTLTISHHAMRAGHRTQ---TAVWLFLTILL 192
           GP G  E F      P+  +NT  LL S +T  +   AM   HR +   T +WL +T +L
Sbjct: 66  GPTGA-ELF----DLPLVAMNTAFLLVSSITYGV---AMLEAHRNRVRSTLIWLAITGML 117

Query: 193 GAVFMGFQAYEYIHAYSELNLKLSSGIYGSTFFMLTGFHGFHVTMGAIMLSVVLYRLLRG 252
           GA F+  + YE+ H   E      +  + ++FF L G HG HVT G I L V+++++ + 
Sbjct: 118 GAGFLALELYEFNHLIHE-GAGPQTSAFLTSFFALVGTHGLHVTFGIIWLIVLMFQVGKF 176

Query: 253 HFTPTHHFAFEGAAWYWHFVDVVWLGLYVVVYWL 286
                +       + +WHF+DV+W+G++  VY +
Sbjct: 177 GLNVENKRRLMCLSMFWHFLDVIWIGVFTFVYLM 210


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.141    0.479 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 516,535
Number of extensions: 18779
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 3
Length of query: 286
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 205
Effective length of database: 733,452
Effective search space: 150357660
Effective search space used: 150357660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)