BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4020.p
         (211 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096071|ref|YP_001101146.1| hypothetical protein HEAR2912 [...   275   1e-75

>gi|134096071|ref|YP_001101146.1| hypothetical protein HEAR2912
           [Herminiimonas arsenicoxydans]
          Length = 194

 Score =  275 bits (703), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 154/192 (80%)

Query: 20  RRRRLGRWKMLAVVAVCAAPLIASYLTYYVIKPQSRNNYGALIDPRQYPIPDLGSTAIDG 79
           + +  GRWK+  V+  CA+P+I SYLTYYVIKPQSR NYGA IDPR YPIP+LG+  +DG
Sbjct: 3   QNKHKGRWKLFLVILACASPIILSYLTYYVIKPQSRTNYGAFIDPRNYPIPELGTRGLDG 62

Query: 80  APAKLQDYRGKWVMLQVDGGDCGETCQNKLLTMRQLRLMQGKEMERIERVWLVTDREPIA 139
            P  L  Y+GKW+MLQVD G+C   C+ KL  MRQLRL QGKEMERIERVWL+TD +P+ 
Sbjct: 63  KPVALDAYQGKWIMLQVDSGECPAACEKKLHDMRQLRLAQGKEMERIERVWLITDDKPLD 122

Query: 140 TLLLREYDGTDILRVDAGKLQSWLPVDAGTSVQDHIYLIDPLGNLMMRFPKDPDPGKMKK 199
           T+L+RE+DGT +LRV +  +++WLPV+  +++ DHIY+IDPLGNLMMRFPKD DP K+KK
Sbjct: 123 TILIREFDGTHMLRVKSEAVRAWLPVEEDSTMTDHIYMIDPLGNLMMRFPKDADPNKIKK 182

Query: 200 DISKLLRASSIG 211
           DI KLL+ASSIG
Sbjct: 183 DIVKLLKASSIG 194


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 377,093
Number of extensions: 14938
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 133
Effective length of database: 743,337
Effective search space: 98863821
Effective search space used: 98863821
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)