BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4018.p
         (297 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096069|ref|YP_001101144.1| protoheme IX farnesyltransferas...   502   e-143
gi|134093580|ref|YP_001098655.1| 4-hydroxybenzoate octaprenyltra...    60   1e-10

>gi|134096069|ref|YP_001101144.1| protoheme IX farnesyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 294

 Score =  502 bits (1292), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/294 (82%), Positives = 265/294 (90%)

Query: 1   MTTLTAQPNRIAQYWALTKPRVTQLAVFCAVIGMFLSTPELPDWHKVIFGTLGIWLLAGA 60
           MTTL    NRIAQYWALTKPRVTQLAVFCAVIGMFL+TP+LPDW  VI  T+GIWLLAGA
Sbjct: 1   MTTLIVSSNRIAQYWALTKPRVTQLAVFCAVIGMFLATPDLPDWKIVIAATIGIWLLAGA 60

Query: 61  AFAINCLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWL 120
           AFAINCLVEREIDSRMARTARRPMA+GEITV QTLVFSGV+GG GMWVLYN VNPLTMWL
Sbjct: 61  AFAINCLVEREIDSRMARTARRPMAQGEITVPQTLVFSGVIGGAGMWVLYNFVNPLTMWL 120

Query: 121 TFATFVGYAIIYTIILKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIW 180
           TFATFVGYA+IYTIILKPAT QNIVIGGL+GAMPPALGWAA+AND+PMQAW+LV+IIFIW
Sbjct: 121 TFATFVGYAVIYTIILKPATPQNIVIGGLSGAMPPALGWAAVANDLPMQAWILVLIIFIW 180

Query: 181 TPPHFWALAMYRRDDYAKSGLPMLPITHGMEVTKLHILMYTIALLAVSMLPFAIGMSGLI 240
           TPPHFWALA+YRRD+YAKSGLPMLPITHG   T+ HI +YTIAL+A +MLPFA+GMSGLI
Sbjct: 181 TPPHFWALALYRRDEYAKSGLPMLPITHGTAFTQFHIWLYTIALVATTMLPFAVGMSGLI 240

Query: 241 YLGAAVLLGAIFFWYSWQIYRHYTDLIARKAFAYSIIYLSILFAVLLVDHYFLF 294
           YL  A +L  IF WY+WQ+YRHYTD+IARK F YSIIYLS+LFA LLVDHY  F
Sbjct: 241 YLVVAAVLDVIFMWYAWQVYRHYTDMIARKMFTYSIIYLSLLFAALLVDHYLRF 294


>gi|134093580|ref|YP_001098655.1| 4-hydroxybenzoate
           octaprenyltransferase (4-HB polyprenyltransferase)
           [Herminiimonas arsenicoxydans]
          Length = 284

 Score = 60.5 bits (145), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 114/268 (42%), Gaps = 20/268 (7%)

Query: 9   NRIAQYWAL---TKPRVTQLAVFCAVIGMFLSTPELPDWHKVIFGTLGIWLLAGAAFAIN 65
           NR+  Y+ L    KP    L ++  +  ++L++   PDW  +   TLG  L+  A  AIN
Sbjct: 2   NRLQLYFRLVRLNKPIGILLLLWPTLWALWLASDGKPDWTLLAIFTLGTILMRSAGCAIN 61

Query: 66  CLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWLTFATF 125
              +R+ D  + RT  RP+  G+I   + L+ +  L  L   +++ L N LT  L+ A  
Sbjct: 62  DYADRDFDKYVQRTVDRPVTSGKIQPREALLVALALALLSFALIWPL-NTLTKQLSIAAV 120

Query: 126 V---GYAIIYTIILKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIWTP 182
           +    Y         P     I  G     +P  +G+AA+ N VP  AW L++    W  
Sbjct: 121 IIAGTYPYFKRFFAIPQAYLGIAFG---FGIP--MGFAAVQNTVPAAAWWLLVANVFWAV 175

Query: 183 PHFWALAMYRRDDYAKSGLPMLPITHGMEVTKLHILMYTIALLAVSMLPFAIGMSGLIYL 242
            +    AM  R+D  K G+    IT G       +  Y + L  + ++ +  G+      
Sbjct: 176 AYDTEYAMVDREDDLKLGMKTSAITFGRHDVAAVMFCYAVTLGLIFIVGWQYGLRTWFAA 235

Query: 243 GAAVLLGAIFFWYSWQIYRHYTDLIARK 270
           G  +  G   +        HYT + AR+
Sbjct: 236 GMLIATGCAIY--------HYTLIRARE 255


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.331    0.142    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 535,461
Number of extensions: 19969
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 216
Effective length of database: 733,452
Effective search space: 158425632
Effective search space used: 158425632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)