BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4017.p
         (196 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096068|ref|YP_001101143.1| SCO1/Sen family protein [Hermin...   296   7e-82

>gi|134096068|ref|YP_001101143.1| SCO1/Sen family protein
           [Herminiimonas arsenicoxydans]
          Length = 187

 Score =  296 bits (757), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 138/180 (76%), Positives = 157/180 (87%), Gaps = 1/180 (0%)

Query: 17  LAACGQSKPELKFNNTDVTGLDYAKDFALTDHNGQPRTLADFKGKVVVMFFGYTQCPDVC 76
           L+AC    P   F NTDVTGL Y KDF+LTDHNG+PRTLADFKGK VV+FFG+TQCPDVC
Sbjct: 8   LSACSGKAPP-AFTNTDVTGLAYGKDFSLTDHNGKPRTLADFKGKAVVVFFGFTQCPDVC 66

Query: 77  PTTMVEMSNVMKELGPDADRVQVLFVTVDPERDTQQVLAQYVPAFDKRFLGLRGDLQQTE 136
           PTTM+EM+NVMK LGPDAD+VQVLFVTVDPERDT ++L QYVPAFD RFLGLRGDL +TE
Sbjct: 67  PTTMLEMANVMKALGPDADKVQVLFVTVDPERDTAELLKQYVPAFDPRFLGLRGDLAETE 126

Query: 137 KVAKEFKVFYQKVPGKQPGSYTMDHTAGSYVFDPQGHIRLFVKHGQGPQTLAHDIKLLLS 196
           K AKEFKVFYQKVPGK PGSYT+DHTAGSYVFD QG IRLF++HGQG + + HD+K+LL+
Sbjct: 127 KTAKEFKVFYQKVPGKTPGSYTIDHTAGSYVFDTQGRIRLFIRHGQGTEPIVHDLKILLA 186


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 349,551
Number of extensions: 13255
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 119
Effective length of database: 746,632
Effective search space: 88849208
Effective search space used: 88849208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)