BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4014.p
         (307 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096066|ref|YP_001101141.1| permease [Herminiimonas arsenic...   358   e-100

>gi|134096066|ref|YP_001101141.1| permease [Herminiimonas
           arsenicoxydans]
          Length = 308

 Score =  358 bits (920), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/306 (63%), Positives = 240/306 (78%)

Query: 2   NWLRQHCAAIADALRHLLRSPGNFVLNVLVVSIALALPFAGLSALENVRPISDQMSVEPE 61
           +W RQH  A+ DA RHL ++PGNF+LNVLVVSIALALPFAGL+ LENVRP+S+Q++VEPE
Sbjct: 3   SWFRQHRFALGDAFRHLFKTPGNFLLNVLVVSIALALPFAGLTLLENVRPVSEQLAVEPE 62

Query: 62  ISIFMKPDASREAAQAVGKTISQVLKDSKTNGKVEFIPREKAFDALKSKTGLADVLNTLG 121
           IS+FM+ DA RE A A+   I ++ +++K   K+EFIPREKA + LK KTGL D + TLG
Sbjct: 63  ISVFMQMDAPRERATALAPEIRRIAQEAKHPVKLEFIPREKALNTLKDKTGLEDAIATLG 122

Query: 122 SNPLPDSYVVRLPGFENAMNAGRVDDIAQQLKKEAGVDTVQIDSEWVKRLAALLRILRLV 181
           SNPLPD+YVV++ GF+N  +AG++  I+ +L+   GV+ VQ+DS WV+RLAALL+++RL+
Sbjct: 123 SNPLPDAYVVKMTGFQNDGDAGKIKAISGKLQALNGVEYVQVDSAWVERLAALLQVMRLI 182

Query: 182 LLFLGITLGAVVVAVVFNTIRLQVMTQRDEIEVSRLFGATNSFIYRPFYYTGALLGLCAG 241
           LLFLG TLG VVVAVVFNTIRLQVMTQR+EIEVSRL GAT++FI RPFYYTGALLGL AG
Sbjct: 183 LLFLGATLGVVVVAVVFNTIRLQVMTQREEIEVSRLVGATDAFICRPFYYTGALLGLIAG 242

Query: 242 LVALGLVVAAQQPLNEAILDFAHLYASEFQLALPSPMAIGLLLAVSGLLGLFGAMLSVRR 301
            VAL  V  A  PLN AI DFA LYASEF+L   +     ++L  S  LGL GA+LSV+R
Sbjct: 243 AVALITVAIALHPLNTAIADFARLYASEFRLVPLNASTTLIMLVASAFLGLLGALLSVQR 302

Query: 302 QLARKA 307
            LAR A
Sbjct: 303 HLARLA 308


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.138    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 436,629
Number of extensions: 13945
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 226
Effective length of database: 733,452
Effective search space: 165760152
Effective search space used: 165760152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)