BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4013.p (230 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding pro... 313 5e-87 gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding pro... 144 5e-36 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 141 3e-35 gi|134095406|ref|YP_001100481.1| lipoprotein releasing system AT... 138 3e-34 gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding pr... 132 1e-32 >gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 313 bits (802), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 167/218 (76%), Positives = 188/218 (86%) Query: 1 MIEFTRVSKQYAREVYALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLT 60 MIEF +VSK+YA+ V AL DITLSV KGEL+FLAGPSGAGKSTLLKMIAAIERP++G + Sbjct: 1 MIEFRQVSKKYAQNVTALSDITLSVDKGELVFLAGPSGAGKSTLLKMIAAIERPSAGTVI 60 Query: 61 VSGTDIVGLKASGLPYLRRNLGLIFQQQKLLLDRNLLANVMLPLIVTGSSRPDAEKRARA 120 VS DI +K SGLPYLRRNLGLIFQQQ+LL DR++LANVMLPLIV G++R DAE+RARA Sbjct: 61 VSDHDIGRIKNSGLPYLRRNLGLIFQQQRLLSDRSVLANVMLPLIVCGAARADAERRARA 120 Query: 121 ALDKVDLLGKAMCEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAAL 180 ALDKV LL KA P LSGGEQQRV+IARAIVNRPQIILADEPTANLDR +ANKVL AL Sbjct: 121 ALDKVGLLDKAASAPQTLSGGEQQRVSIARAIVNRPQIILADEPTANLDRESANKVLDAL 180 Query: 181 KSFHGVGVTCLISTHDEQFLTGADRIIYLDRGRIVDGW 218 K+FH VGVTCLISTHDEQFL A R+IYLD G+I++ W Sbjct: 181 KAFHAVGVTCLISTHDEQFLDTATRVIYLDHGKIIESW 218 >gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 266 Score = 144 bits (362), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 117/200 (58%), Gaps = 2/200 (1%) Query: 17 ALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLTVSGTDIVGLKASGLPY 76 A+ ++ + GE++F+ GPSG+GK+TLL +I+ I +P G + V G D+ L L Sbjct: 59 AVNGVSFDLYFGEMLFIVGPSGSGKTTLLSIISGILKPNEGSVIVKGQDLWQLSKDDLAD 118 Query: 77 LRRN-LGLIFQQQKLLLDRNLLANVMLPLIVTGSSRPDAEKRARAALDKVDLLGKAMCEP 135 R N +G +FQ L NV +PLI+ + DA A+ LD V L + P Sbjct: 119 FRLNTIGFVFQDYHLFPRLTTAENVAIPLILKKNKWGDAITEAKKYLDIVGLKERVDIVP 178 Query: 136 LELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAALKSFHGVGVTC-LIST 194 ++LSGGEQQRVAIARA+V+ P I++ DEPTA+LD K+LA + TC LI T Sbjct: 179 VKLSGGEQQRVAIARAMVSHPSILILDEPTASLDGDTGRKILAFVHDQILNEKTCILIVT 238 Query: 195 HDEQFLTGADRIIYLDRGRI 214 HD + ADRI+Y++ G+I Sbjct: 239 HDTRIFEFADRIMYMEDGKI 258 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 141 bits (355), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 127/218 (58%), Gaps = 4/218 (1%) Query: 1 MIEFTRVSKQYAREVYALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLT 60 MIE VSK Y L D T SV KG+++ + GPSG+GKSTL+K + +E G +T Sbjct: 1 MIEMKNVSKWYG-SFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSIT 59 Query: 61 VSGTDIVGLKASGLPYLRRNLGLIFQQQKLLLDRNLLANVMLPLI-VTGSSRPDAEKRAR 119 V G VG + LP LR +G++FQ +L ++ N+ L I V G S +A +R Sbjct: 60 VDGIS-VGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGL 118 Query: 120 AALDKVDLLGKAMCEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAA 179 LD+V L+ + P +LSGG+QQRVAIARA+ P +L DEPT+ LD N+VL Sbjct: 119 KYLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDV 178 Query: 180 LKSFHGVGVTCLISTHDEQFLTG-ADRIIYLDRGRIVD 216 + G+T ++ TH+ F A+R+I++D+G IV+ Sbjct: 179 MVGLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVE 216 >gi|134095406|ref|YP_001100481.1| lipoprotein releasing system ATP-binding protein lolD [Herminiimonas arsenicoxydans] Length = 228 Score = 138 bits (347), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 5/208 (2%) Query: 7 VSKQYAREVYA---LRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLTVSG 63 ++K + + YA L+ I L + KGE + + G SG+GKSTLL ++ ++ P++G +T+ Sbjct: 11 LAKTFTQGKYAVDVLKGINLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPSAGSVTLLH 70 Query: 64 TDIVGLKASGLPYLR-RNLGLIFQQQKLLLDRNLLANVMLPLIVTGSSRPDAEKRARAAL 122 D L LR R+LG ++Q LL + + L NV +PL++ R A + ARA L Sbjct: 71 QDFASLDEKTRGNLRNRSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPREQAHETARAIL 130 Query: 123 DKVDLLGKAMCEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLA-ALK 181 +V L + P ELSGGE+QRVA+ARA+V +P +LADEPT NLDR A+K L+ Sbjct: 131 ARVGLEHRVTHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRHTAHKTFDLMLE 190 Query: 182 SFHGVGVTCLISTHDEQFLTGADRIIYL 209 +G +I THD + T DRI+ L Sbjct: 191 LSRTLGTAFVIVTHDIELATHCDRILRL 218 >gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding protein pxtA [Herminiimonas arsenicoxydans] Length = 262 Score = 132 bits (333), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 132/224 (58%), Gaps = 11/224 (4%) Query: 1 MIEFTRVSKQYAREVYALRDITLSVKKGELIFLAGPSGAGKSTLLKMIAAIERPTSGKLT 60 MI+ VS +Y + YALR +L + KG+ L G SGAGKSTLL+ I + +P++G + Sbjct: 1 MIQLNDVSVRYG-DTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTID 59 Query: 61 VSGTDIVGLKASGLPYLRRNLGLIFQQQKLLLDRNLLANVMLPLI----VTGSSRPDAEK 116 V G ++ + L RR G++FQQ +L+ R L NV++ + S P +++ Sbjct: 60 VVGLGLLQNRRV-LQAHRRQTGMVFQQHQLIARRTALQNVLMGRLGYHTTLRSLFPLSQE 118 Query: 117 RARA---ALDKVDLLGKAMCEPLELSGGEQQRVAIARAIVNRPQIILADEPTANLDRANA 173 R ALD+V LL KA+ +LSGG+QQRV IARA+ +P++ILADEP A+LD A + Sbjct: 119 EQRIGLRALDRVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPVASLDPATS 178 Query: 174 NKVLAALKSF-HGVGVTCLISTHDEQF-LTGADRIIYLDRGRIV 215 KVL L+ G++ ++S H L +DRI+ L G+++ Sbjct: 179 EKVLEILRQICKEDGISAVVSLHQVDLALKYSDRIVGLAHGKVM 222 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 427,758 Number of extensions: 17532 Number of successful extensions: 232 Number of sequences better than 1.0e-08: 49 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 53 Length of query: 230 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 151 Effective length of database: 740,042 Effective search space: 111746342 Effective search space used: 111746342 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)