BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4011.p
         (459 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096063|ref|YP_001101138.1| putative zinc protease [Hermini...   592   e-170

>gi|134096063|ref|YP_001101138.1| putative zinc protease
           [Herminiimonas arsenicoxydans]
          Length = 427

 Score =  592 bits (1525), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/413 (69%), Positives = 341/413 (82%)

Query: 33  VLGNGLKLIVKQDRRAPTAVQMVWYKVGGIDELNGTTGVSHALEHMMFKGTKQHKVGEFS 92
           +L NG+K+IV +D RAPT   M+WY+ G +DE NGTTG +HALEHMMFKGTK+ K GEFS
Sbjct: 1   MLKNGMKIIVNEDHRAPTVAHMIWYRTGSVDERNGTTGTAHALEHMMFKGTKKLKPGEFS 60

Query: 93  RLVAELGGQENAFTANDFTAYFQQIEKSHLEKVMALEADRMANLQFDANEFAKEIRVIME 152
           + VA+LGG+ENAFT+ D+TAYFQQIEKS LE VMALEADRM NLQFD  EFAKEIRVIME
Sbjct: 61  KRVAQLGGRENAFTSRDYTAYFQQIEKSKLEAVMALEADRMVNLQFDKTEFAKEIRVIME 120

Query: 153 ERRWRTDDQPMGLLNEALNAAAWTAHPYHHPVVGWMDDLQHMTVQDIAHWYRQWYAPNNA 212
           ERR RTDDQP+ ++ EAL A A+ AHPY +PV+GWMDDLQHMTV D+  W+  WYAPNNA
Sbjct: 121 ERRLRTDDQPIAMVQEALAATAYAAHPYRNPVIGWMDDLQHMTVGDVKAWHDAWYAPNNA 180

Query: 213 TLVVAGDVEPQRVLALARKYFGKIPAHPLPQGKPQNEPEQRGMRRVTVKAPAENPYVVMA 272
           T+VV+GDV+ ++V ALA KYFG+ P   L + +PQNEP Q G++RVTVKAPAENPYVV+A
Sbjct: 181 TMVVSGDVDARQVHALAEKYFGRYPQKTLTRTRPQNEPPQLGIKRVTVKAPAENPYVVLA 240

Query: 273 WKVPALRQVEADQDAYALDVLSAVLDGYDNSRLSAQLVRTASKATAVGASYSGVARGPVL 332
           +KVPALR +  D DA+ALDVLSAVLDGYDN+RL+A+LVRT   A  VGASYSG+ARGPV+
Sbjct: 241 FKVPALRDIARDDDAFALDVLSAVLDGYDNARLAAKLVRTDRVANDVGASYSGIARGPVM 300

Query: 333 FTLEGSPADGVSTEELEGLLRAEVERIAREGVSEQELQRVKRQLIASQIYKRDSVFGQAM 392
           F L+G PA G +TE+LE  LRAE+ RIA EGVSE EL+RVK QLIA QIYKRDSVFGQAM
Sbjct: 301 FLLDGVPAAGTTTEQLEKHLRAEITRIATEGVSETELKRVKTQLIAGQIYKRDSVFGQAM 360

Query: 393 EMGMMETIGLGQQNIDRLIERLKSVSAAQVQAVAQKYFKDDTLTVATLVPLPL 445
           E+G ME  GL  ++ID +IERL++V+  QVQ+VAQKYF DD LTVATL+PLP+
Sbjct: 361 EIGSMEMSGLSYKDIDLIIERLRAVTPQQVQSVAQKYFGDDALTVATLLPLPV 413


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 811,546
Number of extensions: 32875
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 459
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 374
Effective length of database: 720,272
Effective search space: 269381728
Effective search space used: 269381728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)