BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4010.p
         (219 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094206|ref|YP_001099281.1| putative partition-like protein...   287   3e-79

>gi|134094206|ref|YP_001099281.1| putative partition-like protein
           [Herminiimonas arsenicoxydans]
          Length = 204

 Score =  287 bits (735), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 173/208 (83%), Gaps = 4/208 (1%)

Query: 1   MPVIVVANPKGGVGKTTLATNLAGYFASQGHGVLLGDIDRQQSSRAWLAIRPEPARPIAT 60
           MPVIV+ANPKGGVGK+T ATNLAGYFA+QGH V+LGD+D QQSSR+WLA+RP     I  
Sbjct: 1   MPVIVIANPKGGVGKSTFATNLAGYFAAQGHKVMLGDVDAQQSSRSWLALRPASLPAIHA 60

Query: 61  WDVSEDNVAKPPKGTSHVVLDTPAGLHGWRLNDTLKLAHKILVPLQPSIFDILATQDFLR 120
           W++ + +VAKPPKGT+H+VLDTPAG  G R    +++A K++VPLQPSIFDILATQ+FL+
Sbjct: 61  WEIEDGHVAKPPKGTTHIVLDTPAGFSGKRFEKVMQIADKVVVPLQPSIFDILATQEFLQ 120

Query: 121 RLANEKAVRDGEIDVGIVGMRVDARTRSAEQLQRFIEGLKLPVLGYLRDTQNYVQLAAHG 180
           +L   K    G+ D+G++GMRV+ RTR+A+QL +++ GL +PVLG+LRDTQNYVQLAA+G
Sbjct: 121 KLQQIK----GKFDLGVLGMRVNGRTRAADQLTKYVNGLGIPVLGFLRDTQNYVQLAANG 176

Query: 181 LTLWDIAPSRVQRDLEQWEPILQWLDRR 208
            TLWD+APSRV++D EQW+ +L+W++++
Sbjct: 177 ATLWDVAPSRVEKDFEQWQGLLKWIEKK 204


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 476,648
Number of extensions: 20141
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 141
Effective length of database: 743,337
Effective search space: 104810517
Effective search space used: 104810517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)