BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4008.p
         (225 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096061|ref|YP_001101136.1| putative methyltransferase [Her...   288   2e-79

>gi|134096061|ref|YP_001101136.1| putative methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 217

 Score =  288 bits (736), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 136/220 (61%), Positives = 167/220 (75%), Gaps = 4/220 (1%)

Query: 6   SPKSSPRPAGQGSKPARPVNRGPHQVRIIGGQWKRTPLPVLEAEGLRPTPDRVRETVFNW 65
           S K + +PA + +    P  +  HQVRIIGG+WKRTPL VL+ EGLRPTPDRVRETVFNW
Sbjct: 2   SKKPNTKPAAKRT----PRPKMTHQVRIIGGKWKRTPLVVLDVEGLRPTPDRVRETVFNW 57

Query: 66  ITHLIDANWEQVACLDLFAGSGALGFEAASRGARRVVMVENNGPAVRQLEANRTKLKAES 125
           I HLID  W ++ CLDLFAG+G LGFEAASRGA +VVMVE + PAVRQLEA + KL AE 
Sbjct: 58  INHLIDGGWSRMKCLDLFAGTGVLGFEAASRGAAQVVMVEMHTPAVRQLEATKEKLHAEQ 117

Query: 126 IAIVRGDALAAVQNAAQREPGGFSLVFIDPPYHQGWLEKVLPACMSLLTPSGLVYVEAEY 185
           +AIVRGDAL+A Q    R+  GF+L+F+DPPYHQ WL K+LPAC+ LL   GL+Y+E+E 
Sbjct: 118 VAIVRGDALSATQGMQARDATGFNLIFLDPPYHQSWLAKILPACIPLLAVDGLIYIESEV 177

Query: 186 ALHGEQAPAWMQAWEVVRADQAGMVFYHLLQRKSSTQIEA 225
           +L  +  P W+Q WEVVRAD AG+VFYHLLQ K   +++A
Sbjct: 178 SLVSDTPPDWLQGWEVVRADNAGLVFYHLLQAKKLPEVQA 217


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 453,523
Number of extensions: 18819
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 147
Effective length of database: 743,337
Effective search space: 109270539
Effective search space used: 109270539
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)