BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4004.p (372 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [... 315 2e-87 gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 125 4e-30 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 119 4e-28 gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [... 118 4e-28 gi|134094477|ref|YP_001099552.1| putative signal peptide [Hermin... 115 3e-27 >gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas arsenicoxydans] Length = 314 Score = 315 bits (808), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 163/317 (51%), Positives = 225/317 (70%), Gaps = 7/317 (2%) Query: 54 LIEVMLTVMPGVFSLETVTLSLIDHDHGIQHILRDLQIGVNEFPKLLFLKDPLHFIDDED 113 +I+ + + L+ VTLSLID D I+ IL DL+I V+++P L+F+ + + DE Sbjct: 1 MIDSVFDTLTEASELDVVTLSLIDPDAEIRRILTDLRIDVSDYPNLIFIAESI----DEM 56 Query: 114 ALESEKPRLGEYVSALHGPLFPH--YEPVSVAVLPLVRQHRLLGYLSLGSAYQERFTRTL 171 A + K LG Y S H LFP +P SVA+LPL+R++ L+G+LSLGS RFT + Sbjct: 57 AHPARKASLGIYNSMQHRRLFPDTVLKPSSVAILPLIRRNALIGWLSLGSLDATRFTSGM 116 Query: 172 ATDFIERLATVAAICLENVINNERLKHIGLTDPLTGVNNRRYIEQRMAEEVARSQRDRSA 231 A+DF++ A++ AIC+ENVINNERL+HIGLTDPLTGVNNRRY+E+R+ EEV R+QR Sbjct: 117 ASDFLQHRASIVAICVENVINNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHT 176 Query: 232 LSCLFIDIDHFKRVNDQFGHQSGDDVLREVAARIKKELRLSDALGRYGGEEFVVLLTHAT 291 LS ++ID+D FK+VND +GHQ GD+VLREVAARIK ELRLSDALGR+GGEEFVVLL A Sbjct: 177 LSAMYIDLDFFKKVNDNYGHQGGDEVLREVAARIKAELRLSDALGRFGGEEFVVLLIDAG 236 Query: 292 RDDAVRIAERIRAGICSRGVMIEGSRDPLKITASIGAASLSPPDRGRPAVDVKQAMLKAA 351 + A+ +AER+R+ I +R +++ S + L+++ SIG ++L +R + Q +L A Sbjct: 237 MEAALAVAERMRSSIANRPLVLS-SGEQLRLSVSIGVSTLQAIERKDEVATIAQQLLAKA 295 Query: 352 DQALYQAKEAGRNRVVQ 368 DQALY AK+ GRN+V+ Sbjct: 296 DQALYLAKQGGRNKVMN 312 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 125 bits (313), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 111/175 (63%), Gaps = 11/175 (6%) Query: 203 DPLTGVNNRRYIEQRMAEEVARSQRDRSALSCLFIDIDHFKRVNDQFGHQSGDDVLREVA 262 D LTG+ NRR + + +E AR+ R++++L+ + +D+DHFK+ ND++GH GD+ L+E++ Sbjct: 350 DSLTGLANRRRFDAALDDEFARAMRNQTSLALIMLDVDHFKKYNDRYGHPQGDECLKEIS 409 Query: 263 ARIKKEL-RLSDALGRYGGEEFVVLLTHATRDDAVRIAERIRAGICSRGVMIEGSRDPLK 321 +K R D + RYGGEEFV+LL R A +AER+R I + + +E + P Sbjct: 410 KILKTATARTGDLVARYGGEEFVILLPGTDRAGAAAVAERVRLAI--QALNMEHAETPDG 467 Query: 322 I-TASIGAASLSPPDRGRPAVDVKQAMLKAADQALYQAKEAGRNR---VVQAASD 372 I TAS+G A+L P + + Q ++ AADQALY+AKE GRN+ QA++D Sbjct: 468 IVTASLGIAALIPQRQQ----NSPQQLVHAADQALYKAKEDGRNQSCISTQASAD 518 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 119 bits (297), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 103/175 (58%), Gaps = 11/175 (6%) Query: 193 NERLKHIGLTDPLTGVNNRRYIEQRMAEEVARSQRDRSALSCLFIDIDHFKRVNDQFGHQ 252 N L+ + TD LTG+ NR + +R+AEE AR +R + L +D+D FKRVND +GH Sbjct: 395 NITLEQLARTDALTGLANRMHTNERLAEEFARFKRSKIPYCILMLDVDFFKRVNDIYGHG 454 Query: 253 SGDDVLREVAARIKKELRLSDALGRYGGEEFVVLLTHATRDDAVRIAERIRAGICSRGVM 312 GD+VL+ VA+ + +R +D +GR+GGEEF+ +L A+ +AE+IR I S + Sbjct: 455 VGDEVLKHVASILSATVRKTDFVGRHGGEEFLSILPMTDSSAAMVVAEKIRNTIESTPIG 514 Query: 313 IEGSRDPLKITASIGAASLSPPDRGRPAVDVKQAMLKAADQALYQAKEAGRNRVV 367 G+ +T SIG ++ D + + AD+ +YQAK++GRN+V+ Sbjct: 515 PVGN-----LTVSIGVQEVTVNDIN------EDVAVTRADECMYQAKKSGRNKVI 558 >gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [Herminiimonas arsenicoxydans] Length = 280 Score = 118 bits (296), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 97/177 (54%), Gaps = 6/177 (3%) Query: 194 ERLKHIGLTDPLTGVNNRRYIEQRMAEEVARSQRDRSALSCLFIDIDHFKRVNDQFGHQS 253 + L+ + D LTGV NRR + MA E A ++ + LS + +DID+FK+ ND +GH Sbjct: 108 KELETLSFKDGLTGVANRRMFDSIMAAEWANAKLNHQPLSVIMLDIDYFKQYNDHYGHIQ 167 Query: 254 GDDVLREVAARIKKELRLS-DALGRYGGEEFVVLLTHATRDDAVRIAERIRAGICSRGVM 312 GDD L+ VA + R S D R+GGEEF+++L +A+ IAER R IC + Sbjct: 168 GDDCLKRVANILSSATRRSRDFFARFGGEEFILVLPETDELNAINIAERCRTLICKEKIP 227 Query: 313 IEGSRDPLKITASIGAASLSPPDRGRPAVDVKQAMLKAADQALYQAKEAGRNRVVQA 369 E S IT S+G ++ P D+ P ++ D+ LYQAK+ GRN + + Sbjct: 228 HEKSEVIPMITVSLGVGTVIPTDKDDPI-----RFIEEVDKRLYQAKQRGRNCIANS 279 >gi|134094477|ref|YP_001099552.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 891 Score = 115 bits (288), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 98/175 (56%), Gaps = 14/175 (8%) Query: 195 RLKHIGLTDPLTGVNNRRYIEQRMAEEVARSQRDRSALSCLFIDIDHFKRVNDQFGHQSG 254 +L H DPLTG+ NRR E+R+ + R + L++D+D FK VND GH +G Sbjct: 455 QLSHQAAHDPLTGLFNRREFERRLELAIDTLARQSKQHALLYLDLDQFKIVNDTCGHSAG 514 Query: 255 DDVLREVAARIKKELRLSDALGRYGGEEFVVLLTHATRDDAVRIAERIRAGICSRGVMIE 314 D++LR++ A ++ +R SD L R GG+EF L + + + A+RIAE++R IC + + Sbjct: 515 DELLRQITALLQPLVRDSDTLARLGGDEFGAFLENCSPESAIRIAEKLRQTICDFHFVWQ 574 Query: 315 GSRDPLKIT---ASIGAASLSPPDRGRPAVDVKQAMLKAADQALYQAKEAGRNRV 366 P+ ++ + +LS PD +L AAD A Y AK+AGRNRV Sbjct: 575 DKIFPIGVSIGLVNFNTNALSLPD-----------LLSAADTACYVAKDAGRNRV 618 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 672,197 Number of extensions: 27818 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 31 Length of query: 372 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 289 Effective length of database: 726,862 Effective search space: 210063118 Effective search space used: 210063118 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)