BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4003.p
         (299 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095685|ref|YP_001100760.1| hypothetical protein HEAR2513 [...   488   e-139

>gi|134095685|ref|YP_001100760.1| hypothetical protein HEAR2513
           [Herminiimonas arsenicoxydans]
          Length = 293

 Score =  488 bits (1257), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/289 (80%), Positives = 255/289 (88%), Gaps = 1/289 (0%)

Query: 12  SQSRAKPVAESAPQAHEIRPGQSIELLKELHILTRDGKLNQDSRRKLKQVYHLYQFIEPL 71
           S+S+     +   QAHEIRPGQSIELLKELHILTRDGKLNQDSRRKLKQVYHLYQFIEPL
Sbjct: 2   SKSQETKKEKETTQAHEIRPGQSIELLKELHILTRDGKLNQDSRRKLKQVYHLYQFIEPL 61

Query: 72  LQEVLADHPDVSLVDHGAGKSYLGFILYDLFFKGLAGAPHIYGIETREELVRKSEELAAR 131
           LQE+  DHPD++L DHGAGKSYLGFILYDLFFK       IYGIETR+ELV+KSE LA +
Sbjct: 62  LQEIQNDHPDITLADHGAGKSYLGFILYDLFFKERKDNSRIYGIETRDELVQKSEALAKK 121

Query: 132 LGFGGMSFLNLSVADSISSPSLPDNIDVVTALHACDTATDDAIHFALAKQARFIVLVPCC 191
           L F GMSFLNLSVA+SI+S  LP+ ID+VTALHAC+TATDDAIHFAL KQA+FIVLVPCC
Sbjct: 122 LDFPGMSFLNLSVAESITSDRLPEKIDIVTALHACNTATDDAIHFALQKQAKFIVLVPCC 181

Query: 192 QAEVASVLNRNKGKSLANS-LTEIWRHPLHTREFGSQVTNVLRCLQLEAHGYKVSVTELV 250
           QAEVASVL +NKGK+LA S LTEIWRHPLHTREFGSQVTNVLRCLQLEAHGY+V+VTELV
Sbjct: 182 QAEVASVLKKNKGKTLAKSALTEIWRHPLHTREFGSQVTNVLRCLQLEAHGYQVNVTELV 241

Query: 251 GWEHSMKNELIIAQYRDLPRRRPAERLQEVLRTLGLEEMQTRFFASAAA 299
           GWEHSMKNELIIA YRDLPR+RP+ERLQEVL+TLGLEEMQTRFF    A
Sbjct: 242 GWEHSMKNELIIASYRDLPRKRPSERLQEVLQTLGLEEMQTRFFTGTKA 290


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 554,404
Number of extensions: 21687
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 218
Effective length of database: 733,452
Effective search space: 159892536
Effective search space used: 159892536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)