BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4001.p
         (401 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093830|ref|YP_001098905.1| acetyl-CoA acetyltransferase [H...   300   7e-83
gi|134095996|ref|YP_001101071.1| acetyl-CoA acetyltransferase [H...   268   3e-73

>gi|134093830|ref|YP_001098905.1| acetyl-CoA acetyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 391

 Score =  300 bits (769), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 179/402 (44%), Positives = 247/402 (61%), Gaps = 17/402 (4%)

Query: 2   QALICDAIRTPFGRYGGALGAMRADDLAAAPIRSLMERNPGVDWSRVDDILYGCANQAGE 61
           + +I  A RT  G++GGAL  + A DL A  IR+L+ R  G+    + +++ G    AG 
Sbjct: 3   EIVIVAAGRTAVGKFGGALAKIPAADLGAHIIRNLLLRT-GIAADAISEVILGQVLTAG- 60

Query: 62  DNRNVARMAGLLAGLPIEVPGTTINRLCGSSLDAVGLAARAIKSGEVELMIAGGVESMTR 121
             +N AR A +  GLP  VP  TIN++CGS L A  LAA+AI+ G+  ++IAGG E+M+ 
Sbjct: 61  CGQNPARQASIRGGLPDMVPAFTINKVCGSGLKATHLAAQAIQCGDAHIIIAGGQENMSA 120

Query: 122 APFVMGKAESAFSR-SAAIFDTTIG---WRFVNPLMKAQYGIDSMPETAENVATDFRINR 177
           +P V+  +          + DT I    W   N     QY    M  TAEN+A  F I+R
Sbjct: 121 SPHVLQNSREGIRMGDGKLVDTMIIDGLWDVYN-----QY---HMGTTAENIAKKFGISR 172

Query: 178 ADQDAFALRSQQRWAAAQEAGFFAGEIAPLAIPQKKGDPLIITTDEHPRPDTTLGTLSKL 237
            +QD FAL SQ +  AAQ AG F  EI PL IP KKG  +I+ +DE+ +P TTL +L+ L
Sbjct: 173 QEQDEFALASQHKAEAAQNAGKFKDEIIPLEIPGKKG-AVIVDSDEYIKPGTTLESLAAL 231

Query: 238 KGVVRPDGTVTAGNASGVNDGACALLLASPQAADRYRLQPRARVLGMATAGVAPRIMGFG 297
           +     DGTVTAGNASG+NDGA A+++ + + A    L+P AR+   ++AGV P IMG G
Sbjct: 232 RPAFSKDGTVTAGNASGINDGAAAVIMMTAKKAAELGLKPLARIKAYSSAGVDPAIMGMG 291

Query: 298 PAPAARKVLAQVGLTLAQMDVIELNEAFAAQGLAVTRELGLPDDAAHVNPNGGAIAIGHP 357
           P PAA+  L + G +   +D++E+NEAFAAQ +AV RE+G   D   +N NGGAIAIGHP
Sbjct: 292 PVPAAQLCLKKAGWSHQDIDLMEINEAFAAQAIAVNREMGW--DTGKINVNGGAIAIGHP 349

Query: 358 LGASGARLVTTALNQLECSGGRYALCTMCIGVGQGIALVIER 399
           +GASG R++ T L+++     R  L ++CIG G G+AL IER
Sbjct: 350 IGASGCRILVTLLHEMMRRDARRGLASLCIGGGMGVALAIER 391


>gi|134095996|ref|YP_001101071.1| acetyl-CoA acetyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 398

 Score =  268 bits (686), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 176/409 (43%), Positives = 231/409 (56%), Gaps = 29/409 (7%)

Query: 3   ALICDAIRTPFGRY-GGALGAMRADDLAAAPIRSLMERNPGVDWSRVDDILYGCANQAGE 61
           A I  A RTP G+   G     R DDL    ++S++ + P +D + ++D + GC+    E
Sbjct: 8   AYIVAATRTPIGKAPRGMFRNTRPDDLLVRVLQSVLSQVPDLDPNLIEDAIIGCSFPEAE 67

Query: 62  DNRNVARMAGLLAGLPIEVPGTTINRLCGSSLDAVGLAARAIKSGEVELMIAGGVESMTR 121
              N+ARM  LLAGLP  V G T+NR C S L A+ +AA  I+ GE ++MIAGG ESM+ 
Sbjct: 68  QGLNMARMGVLLAGLPKTVGGVTVNRYCASGLTAIAMAADRIRVGEADVMIAGGAESMSM 127

Query: 122 APFVMGKAESAFSRSAAIF-DTTIGWRFVNPLMKAQYGIDSMPETAENVATDFRINRADQ 180
            P +MG   +    +  IF D  IG           YG   M  TAE VA  ++++R  Q
Sbjct: 128 VP-MMGHHPAM---NMGIFKDENIGM---------AYG---MGLTAERVAEQWKVSREAQ 171

Query: 181 DAFALRSQQRWAAAQEAGFFAGEIAPLAI----PQKKGDPLIITT-----DEHPRPDTTL 231
           D FAL S  +  AAQ++G F  E+  + I    P      + ITT     DE  R DT+L
Sbjct: 172 DQFALNSHLKALAAQQSGEFNNEMTSVDIVERFPNLSSGEIDITTRMVNMDEGARADTSL 231

Query: 232 GTLSKLKGVVRPDGTVTAGNASGVNDGACALLLASPQAADRYRLQPRARVLGMATAGVAP 291
             L+KL+ V  P G+VTAGN+S  +DGA AL+L S +   ++ L P AR +  A  GV P
Sbjct: 232 EALAKLRPVFAPKGSVTAGNSSQTSDGAGALILVSEKILRQFNLTPLARFVSFAVRGVPP 291

Query: 292 RIMGFGPAPAARKVLAQVGLTLAQMDVIELNEAFAAQGLAVTRELGLPDDAAHVNPNGGA 351
            IMG GP  A    L   GL   QMD IELNEAFAAQ LAV ++LGL  D A VNP GGA
Sbjct: 292 EIMGIGPKEAIPAALRAAGLKQDQMDWIELNEAFAAQALAVIQDLGL--DPARVNPVGGA 349

Query: 352 IAIGHPLGASGARLVTTALNQLECSGGRYALCTMCIGVGQGIALVIERV 400
           IA+GHPLGA+GA    T ++ L     +Y + TMC+G G G A + ER+
Sbjct: 350 IALGHPLGATGAIRSATVVHALRRKNMKYGMVTMCVGTGMGAAGIFERM 398


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 774,602
Number of extensions: 32826
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 317
Effective length of database: 723,567
Effective search space: 229370739
Effective search space used: 229370739
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)