BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3998.p
         (512 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095997|ref|YP_001101072.1| 3-hydroxyacyl-CoA dehydrogenase...   105   4e-24

>gi|134095997|ref|YP_001101072.1| 3-hydroxyacyl-CoA dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 799

 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/295 (32%), Positives = 141/295 (47%), Gaps = 28/295 (9%)

Query: 16  VAVIGSGTMGAGIAQVAAVAGHPVLLYD--SREGAATKAIGDIRTSLDKLANKEKIS-AE 72
           VAV+G+G MGA IA     A  PV+L+D   ++G     +      L  LAN +K+S A 
Sbjct: 9   VAVLGAGVMGAQIAAHCVNAKVPVVLFDLPGKDGDQNGVV------LRALANLKKLSPAP 62

Query: 73  VAQ----AASERLRVASSLQELRGARLVVEAIVEQLAAKQELFGKMEALVDAQCILASNT 128
           +A     A  E    A  L++L    L++EAI E++  K +L+ K+   +    I ASNT
Sbjct: 63  LANPDHAALIEVANYADDLEKLGECDLIIEAIAERMDWKHDLYKKVAPHIAPNAIFASNT 122

Query: 129 SSLSITHI--GATLRHPERLVGMHFFNPVPQMALVEIIRGLASDATVA-QCVYDTAQAWG 185
           S LSIT +  G       R  G+HFFNP   M LVE+I   A+   +  Q         G
Sbjct: 123 SGLSITALAEGFDADLKARFCGVHFFNPPRYMHLVELIPTAATSPEILDQLEGFLTSTLG 182

Query: 186 KLPVFASSTPGFIVNRLARPYYAEGLRVLHERGAQPATIDAIMRESGG----FRMGPFEL 241
           K  V A  TP FI NR+        L  +HE      ++D +   +G      + G F  
Sbjct: 183 KGVVRAFDTPNFIANRVG---IFGMLATMHEAEKFGLSVDVVDDLTGSKLGRAKSGTFRT 239

Query: 242 MDLIGHDVNFAVTQSVFQAYFNDPRF----TPSLIQQELVHAGYLGRKSGRGFYR 292
            D++G D    V  ++     +DP F    TP ++ + L+  G LG+K+G GFY+
Sbjct: 240 ADVVGLDTMAHVITTMQNTLQDDPFFPVYKTPEILTR-LIGGGALGQKAGAGFYK 293


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 914,011
Number of extensions: 36260
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 426
Effective length of database: 716,977
Effective search space: 305432202
Effective search space used: 305432202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)