BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3997.p (263 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093495|ref|YP_001098570.1| enoyl-CoA hydratase [Herminiimo... 139 1e-34 gi|134095152|ref|YP_001100227.1| putative enoyl-CoA hydratase/is... 112 3e-26 gi|134095889|ref|YP_001100964.1| enoyl-CoA hydratase [Herminiimo... 90 1e-19 >gi|134093495|ref|YP_001098570.1| enoyl-CoA hydratase [Herminiimonas arsenicoxydans] Length = 258 Score = 139 bits (350), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/264 (33%), Positives = 134/264 (50%), Gaps = 13/264 (4%) Query: 1 MSAPSILFENQDGVAVITLNRPDKLNSFTVAMHLELREAIAKLQADPGVRVLLLTGAGRG 60 M +IL E V +ITLNRP LN+ + EL +A+ A+ + +++TG+ + Sbjct: 1 MQYENILIEIHGKVGLITLNRPAALNALNDKLMDELGKALLSFDANEDIGCMIITGSEKA 60 Query: 61 FCAGQDLGDRAVTPGDEAVDLGHSIDQYYGPLV----KSLRALPFPVICAVNGVAAGAGA 116 F AG D+G A +D Y G + + +R++ PVI AV G A G G Sbjct: 61 FAAGADIGAMATYS---------YMDVYKGDYITRNWEQIRSVRKPVIAAVAGYALGGGC 111 Query: 117 NLPLACDIVLAARSASFVEVFCKLGLIPDTGGTYFLPRLVGTARAMGMALLGEKISAEQA 176 L + CD ++AA +A F + KLG+IP GGT LPR V ++AM M L + A +A Sbjct: 112 ELAMMCDFIIAADTAKFGQPEIKLGIIPGAGGTQRLPRSVSKSKAMDMCLTARMMDAAEA 171 Query: 177 EQWGLIWKCIDDDQLMPQARAMAAQFAKAPTRGLAATKATLYASPANTLAQQLDLERDTM 236 E+ GL+ + + D+L +A A A A + K ++ + TLA+ + ER Sbjct: 172 ERAGLVSRVVAADKLQEEALAAATVIASMSLPMVMMIKESINRAYETTLAEGVQFERRLF 231 Query: 237 RELGHSRDYREGVSAFLEKRAPHF 260 + D +EG+ AF+EKRA F Sbjct: 232 HSTFATEDQKEGMRAFVEKRAAKF 255 >gi|134095152|ref|YP_001100227.1| putative enoyl-CoA hydratase/isomerase family protein [Herminiimonas arsenicoxydans] Length = 301 Score = 112 bits (279), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 130/260 (50%), Gaps = 2/260 (0%) Query: 1 MSAPSILFENQDGVAVITLNRPDKLNSFTVAMHLELREAIAKLQADPGVRVLLLTGAGRG 60 MSA I + ++TL+ P N+ M E + D +R ++LTGA Sbjct: 43 MSA-EIRASRHEATLILTLSNPGAKNALHPDMFAAAIETFSTAARDDSIRAVILTGADNF 101 Query: 61 FCAGQDLGDRAVTPGDEAVDLGHSIDQYYGPLVKSLRALPFPVICAVNGVAAGAGANLPL 120 FCAG +L + D ++D G ++++R P PVI AV AAGAG +L L Sbjct: 102 FCAGGNLNTLLELRAQDRADQADAVDSLRG-WIEAIRDCPKPVIAAVESAAAGAGFSLAL 160 Query: 121 ACDIVLAARSASFVEVFCKLGLIPDTGGTYFLPRLVGTARAMGMALLGEKISAEQAEQWG 180 ACD+++A +A F + +GL PD G ++FL + + A + L G+ + A++ G Sbjct: 161 ACDLIVAGANAKFAMSYVNIGLTPDGGASWFLSQALPRQLATEIMLEGKPVPAQRLHDLG 220 Query: 181 LIWKCIDDDQLMPQARAMAAQFAKAPTRGLAATKATLYASPANTLAQQLDLERDTMRELG 240 +I + + D + + A + A + K+ + ++L Q ++E++ + Sbjct: 221 VINRIVADGATLQTSLDWADELAALSGHAVERIKSLTREARDHSLPQHFEIEKNHFVDSL 280 Query: 241 HSRDYREGVSAFLEKRAPHF 260 + RD +EG+ AFLEKRAPH+ Sbjct: 281 NHRDAQEGIHAFLEKRAPHY 300 >gi|134095889|ref|YP_001100964.1| enoyl-CoA hydratase [Herminiimonas arsenicoxydans] Length = 264 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 117/256 (45%), Gaps = 11/256 (4%) Query: 11 QDGVAVITLNRPDKLNSFTVAMHLELREAIAKLQADPGVRVLLLTGA-GRGFCAGQDLGD 69 QDG+A I +RP N+ T AM+ EL +++AD +RV GA G F AG D+ Sbjct: 17 QDGIAAILFDRPQARNAMTWAMYTELGAICERIRADQSIRVTTFRGAGGEAFVAGTDIEQ 76 Query: 70 -RAVTPGDEAVDLGHSIDQYYGPLVKSLRALPFPVICAVNGVAAGAGANLPLACDIVLAA 128 R + G++ + +D+ G + ALP P + V+G A G G + ACD +A Sbjct: 77 FRNFSSGEDGIAYERIVDERIG----QIEALPMPTLAIVDGWAIGGGLAIAAACDFRIAT 132 Query: 129 RSASF-VEVFCKLGLIPDTGGTYFLPRLVGTARAMGMALLGEKISAEQAEQWGLIWKCID 187 ++ F + + LG + G RA + LL E ++A++ G + + ++ Sbjct: 133 PASRFGIPIARTLGNCLSMANIARVVAAFGVGRAKRILLLAEVLAADELLAAGFVTEVVE 192 Query: 188 DDQLMPQARAMAAQFAKAPTRGLAATKATLYASPANTLAQQLDLERDTMRELGHSRDYRE 247 L A A+ + A + +K + L DL +R S D++ Sbjct: 193 AAVLDATADALCKKLASNAPITMGVSKEAIRRLTQAGLPDGEDL----IRACYGSSDFKI 248 Query: 248 GVSAFLEKRAPHFTGQ 263 GV AFLEK+ P ++G Sbjct: 249 GVHAFLEKQRPLWSGN 264 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 477,156 Number of extensions: 18138 Number of successful extensions: 63 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 59 Number of HSP's successfully gapped: 4 Length of query: 263 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 183 Effective length of database: 736,747 Effective search space: 134824701 Effective search space used: 134824701 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)