BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3996.p
         (356 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093902|ref|YP_001098977.1| putative flavohemoprotein [Herm...    64   1e-11

>gi|134093902|ref|YP_001098977.1| putative flavohemoprotein
           [Herminiimonas arsenicoxydans]
          Length = 397

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 103/241 (42%), Gaps = 17/241 (7%)

Query: 12  VKQETRDTIVVSFALPAELQDTFAYQQGQHLTLRSHI-NGEELRRSYSICSARQDRQLRV 70
           V  E     V S+++ A  +    +Q GQ++++   + +G    R YS+  +   + LR+
Sbjct: 157 VAVEKESAQVTSYSMVAVDRQLPEFQPGQYVSVAVFLPDGLRQLRQYSLSESPDHQHLRI 216

Query: 71  AIKR------VPGGLFSNWANESFVPGQSIEAMPPMGQFNVPLDAANRKHYLAFAAGSGI 124
           ++KR       P G+ SNW +++ V G  +    P G F    D  +    +  +AG GI
Sbjct: 217 SVKREVAGAETPAGVVSNWLHDNVVVGSILPVSMPAGDFTPDTDGEDP--IVLLSAGVGI 274

Query: 125 TPMLSIIKTTLLAEPHSQFTLVYANRASSSVIFKEELSDLKDAYLERFNVVYVMSREQQD 184
           TPM+S +       P  +    +A R +     + +++    +     +V +    E  D
Sbjct: 275 TPMISALNRIAKVSPRRRVIFAHAARNAHHHPHRADIAKAVASMPNLHSVTFYEEAEHDD 334

Query: 185 VELFNGRIDRAKCDAFFASW-IKLQDIDTAFLCGPQEMVQAVADSLQAHGMSKAQIKTEL 243
                GR++  K       W +K   +   ++CGP   +QA    L A G+    +  E+
Sbjct: 335 ETSLAGRMELQK----LPQWDVKKSQV---YMCGPLPFMQAQWADLLAQGVPAQHLHREV 387

Query: 244 F 244
           F
Sbjct: 388 F 388


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 645,196
Number of extensions: 24831
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 273
Effective length of database: 726,862
Effective search space: 198433326
Effective search space used: 198433326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)