BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3988.p
         (686 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095838|ref|YP_001100913.1| succinate-semialdehyde dehydrog...    88   1e-18

>gi|134095838|ref|YP_001100913.1| succinate-semialdehyde
           dehydrogenase I, NADP-dependent [Herminiimonas
           arsenicoxydans]
          Length = 492

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 127/282 (45%), Gaps = 28/282 (9%)

Query: 152 GVAVHINAFNFPIWGMLEKFAPSFLAGMPCIVKPATATSYLTEAAVRLIQQSGLLPAGSL 211
           G+   I  +NFPI  +  K AP+  AG   ++KPA  T     A   L  ++GL PAG +
Sbjct: 154 GICAAITPWNFPIAMITRKVAPAVAAGCTIVIKPAEQTPLSALAIAELAHRAGL-PAGVI 212

Query: 212 QLVIGATGDLL---ERLQAQDVV---TFTGSADTAAKL--RAHPNLIANAIPFNAEADSL 263
            ++     + +   + L A  +V   +FTGS      L  +  P +   A+     A   
Sbjct: 213 NVITADAENSIVVGKTLCASPIVRHVSFTGSTPVGRILMEQCAPTVKKIALELGGHA--- 269

Query: 264 NCAILGPDVTADDEEFELFVKEVAREMSTKAGQKCTAIRRAIVPRQHVDAVAERLAARLS 323
                 P +  DD + +  V    +     AGQ C    R  V     D   ++LAA  +
Sbjct: 270 ------PFIVFDDADLDAAVTGALQSKYRNAGQTCVCTNRFYVHESIYDVFVQKLAAGAA 323

Query: 324 KIVVGDPALESVRMGPLASKAQQRDVEERVT-LLKQGAEVILGAGGAFQPQGEGVAAGAF 382
           +I VG+   + V  GPL      R VE+ V+  +K+GA V+   GG     G     G F
Sbjct: 324 RIKVGNGFEQGVLQGPLIDDQAIRKVEQHVSDAVKKGASVM--TGGKKHALG-----GHF 376

Query: 383 FAPTLLLARDTGAGSPVHEVEAFGPVSTLMPYDDLDEALALA 424
           + PT +L+  T   S +HE E FGPV+ ++ +   DEA+A A
Sbjct: 377 YEPT-VLSNITDDMSIMHE-ETFGPVAAIVKFKTEDEAIAAA 416


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,283,390
Number of extensions: 54357
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 2
Length of query: 686
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 598
Effective length of database: 710,387
Effective search space: 424811426
Effective search space used: 424811426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)